Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image

Zhou Hang, Li Shiwei, Huang Qing, Liu Shijie, Quan Tingwei, Ruiyao Cai, Ali Ertürk, Zeng Shaoqun
doi: https://doi.org/10.1101/743179
Zhou Hang
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Li Shiwei
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Huang Qing
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Liu Shijie
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Quan Tingwei
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ruiyao Cai
3Institute for Tissue Engineering and Regenerative Medicine, Helmholtz Center Munich, Neuherberg, 85764, Germany
4Institute for Stroke and Dementia Research, Klinikum der Universität München, Ludwig-Maximilians University, Munich, 81377, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ali Ertürk
3Institute for Tissue Engineering and Regenerative Medicine, Helmholtz Center Munich, Neuherberg, 85764, Germany
4Institute for Stroke and Dementia Research, Klinikum der Universität München, Ludwig-Maximilians University, Munich, 81377, Germany
5Munich Cluster for System Neurology (SyNergy), Munich, 81377, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Zeng Shaoqun
1Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
2MoE Key Laboratory for Biomedical Photonics, Collaborative Innovation Center for Biomedical Engineering, School of Engineering Sciences, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: sqzeng@mail.hust.edu.cn
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

Deep learning technology enables us acquire high resolution image from low resolution image in biological imaging free from sophisticated optical hardware. However, current methods require a huge number of the precisely registered low-resolution (LR) and high-resolution (HR) volume image pairs. This requirement is challengeable for biological volume imaging. Here, we proposed 3D deep learning network based on dual generative adversarial network (dual-GAN) framework for recovering HR volume images from LR volume images. Our network avoids learning the direct mappings from the LR and HR volume image pairs, which need precisely image registration process. And the cycle consistent network makes the predicted HR volume image faithful to its corresponding LR volume image. The proposed method achieves the recovery of 20x/1.0 NA volume images from 5x/0.16 NA volume images collected by light-sheet microscopy. In essence our method is suitable for the other imaging modalities.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Back to top
PreviousNext
Posted August 22, 2019.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image
Zhou Hang, Li Shiwei, Huang Qing, Liu Shijie, Quan Tingwei, Ruiyao Cai, Ali Ertürk, Zeng Shaoqun
bioRxiv 743179; doi: https://doi.org/10.1101/743179
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
A 3D High Resolution Generative Deep-learning Network for Fluorescence Microscopy Image
Zhou Hang, Li Shiwei, Huang Qing, Liu Shijie, Quan Tingwei, Ruiyao Cai, Ali Ertürk, Zeng Shaoqun
bioRxiv 743179; doi: https://doi.org/10.1101/743179

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (2639)
  • Biochemistry (5231)
  • Bioengineering (3653)
  • Bioinformatics (15748)
  • Biophysics (7226)
  • Cancer Biology (5604)
  • Cell Biology (8060)
  • Clinical Trials (138)
  • Developmental Biology (4748)
  • Ecology (7477)
  • Epidemiology (2059)
  • Evolutionary Biology (10535)
  • Genetics (7708)
  • Genomics (10093)
  • Immunology (5168)
  • Microbiology (13844)
  • Molecular Biology (5361)
  • Neuroscience (30629)
  • Paleontology (213)
  • Pathology (873)
  • Pharmacology and Toxicology (1520)
  • Physiology (2236)
  • Plant Biology (4992)
  • Scientific Communication and Education (1039)
  • Synthetic Biology (1382)
  • Systems Biology (4135)
  • Zoology (808)