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Segmenting nuclei in brightfield images with neural networks

Dmytro Fishman, Sten-Oliver Salumaa, Daniel Majoral, Samantha Peel, Jan Wildenhain, Alexander Schreiner, Kaupo Palo, Leopold Parts
doi: https://doi.org/10.1101/764894
Dmytro Fishman
1Department of Computer Science, University of Tartu, J. Liivi 2, 50409, Estonia
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Sten-Oliver Salumaa
1Department of Computer Science, University of Tartu, J. Liivi 2, 50409, Estonia
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Daniel Majoral
1Department of Computer Science, University of Tartu, J. Liivi 2, 50409, Estonia
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Samantha Peel
2Discovery Sciences, R&D, AstraZeneca, Cambridge, United Kingdom
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Jan Wildenhain
2Discovery Sciences, R&D, AstraZeneca, Cambridge, United Kingdom
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Alexander Schreiner
3PerkinElmer Cellular Technologies Germany GmbH, Hamburg, Germany
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Kaupo Palo
3PerkinElmer Cellular Technologies Germany GmbH, Hamburg, Germany
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Leopold Parts
1Department of Computer Science, University of Tartu, J. Liivi 2, 50409, Estonia
4Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SA, United Kingdom
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  • For correspondence: leopold.parts@ut.ee
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Article Information

doi 
https://doi.org/10.1101/764894
History 
  • September 10, 2019.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.

Author Information

  1. Dmytro Fishman1,*,
  2. Sten-Oliver Salumaa1,*,
  3. Daniel Majoral1,
  4. Samantha Peel2,
  5. Jan Wildenhain2,
  6. Alexander Schreiner3,
  7. Kaupo Palo3 and
  8. Leopold Parts1,4,@
  1. 1Department of Computer Science, University of Tartu, J. Liivi 2, 50409, Estonia
  2. 2Discovery Sciences, R&D, AstraZeneca, Cambridge, United Kingdom
  3. 3PerkinElmer Cellular Technologies Germany GmbH, Hamburg, Germany
  4. 4Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SA, United Kingdom
  1. ↵@to whom correspondence should be addressed, leopold.parts{at}ut.ee
  1. ↵* these authors contributed equally to this work

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Posted September 10, 2019.
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Segmenting nuclei in brightfield images with neural networks
Dmytro Fishman, Sten-Oliver Salumaa, Daniel Majoral, Samantha Peel, Jan Wildenhain, Alexander Schreiner, Kaupo Palo, Leopold Parts
bioRxiv 764894; doi: https://doi.org/10.1101/764894
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Segmenting nuclei in brightfield images with neural networks
Dmytro Fishman, Sten-Oliver Salumaa, Daniel Majoral, Samantha Peel, Jan Wildenhain, Alexander Schreiner, Kaupo Palo, Leopold Parts
bioRxiv 764894; doi: https://doi.org/10.1101/764894

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