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ChIP-Hub: an Integrative Platform for Exploring Plant Regulome

View ORCID ProfileDijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
doi: https://doi.org/10.1101/768903
Dijun Chen
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
2School of Life Sciences, Nanjing University, Nanjing 210023, China
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  • For correspondence: chendijun2012@gmail.com kerstin.kaufmann@hu-berlin.de
Liang-Yu Fu
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
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Peijing Zhang
3Department of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
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Ming Chen
3Department of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
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Kerstin Kaufmann
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
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  • For correspondence: chendijun2012@gmail.com kerstin.kaufmann@hu-berlin.de
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Abstract

Plant genomes encode a complex and evolutionary diverse regulatory grammar that forms the basis for most life on earth. A wealth of regulome and epigenome data have been generated in various plant species, but no common, standardized resource is available so far for biologists. Here we present ChIP-Hub, an integrative web-based platform in the ENCODE standards that bundles publicly available datasets reanalyzed from >40 plant species, allowing visualization and meta-analysis.

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  • http://www.chip-hub.org/

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted September 14, 2019.
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ChIP-Hub: an Integrative Platform for Exploring Plant Regulome
Dijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
bioRxiv 768903; doi: https://doi.org/10.1101/768903
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ChIP-Hub: an Integrative Platform for Exploring Plant Regulome
Dijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
bioRxiv 768903; doi: https://doi.org/10.1101/768903

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