Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

ChIP-Hub: an Integrative Platform for Exploring Plant Regulome

View ORCID ProfileDijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
doi: https://doi.org/10.1101/768903
Dijun Chen
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
2School of Life Sciences, Nanjing University, Nanjing 210023, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Dijun Chen
  • For correspondence: chendijun2012@gmail.com kerstin.kaufmann@hu-berlin.de
Liang-Yu Fu
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Peijing Zhang
3Department of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ming Chen
3Department of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kerstin Kaufmann
1Department for Plant Cell and Molecular Biology, Institute for Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: chendijun2012@gmail.com kerstin.kaufmann@hu-berlin.de
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

Plant genomes encode a complex and evolutionary diverse regulatory grammar that forms the basis for most life on earth. A wealth of regulome and epigenome data have been generated in various plant species, but no common, standardized resource is available so far for biologists. Here we present ChIP-Hub, an integrative web-based platform in the ENCODE standards that bundles publicly available datasets reanalyzed from >40 plant species, allowing visualization and meta-analysis.

Footnotes

  • http://www.chip-hub.org/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Back to top
PreviousNext
Posted September 14, 2019.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
ChIP-Hub: an Integrative Platform for Exploring Plant Regulome
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
ChIP-Hub: an Integrative Platform for Exploring Plant Regulome
Dijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
bioRxiv 768903; doi: https://doi.org/10.1101/768903
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
ChIP-Hub: an Integrative Platform for Exploring Plant Regulome
Dijun Chen, Liang-Yu Fu, Peijing Zhang, Ming Chen, Kerstin Kaufmann
bioRxiv 768903; doi: https://doi.org/10.1101/768903

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3689)
  • Biochemistry (7797)
  • Bioengineering (5676)
  • Bioinformatics (21290)
  • Biophysics (10578)
  • Cancer Biology (8176)
  • Cell Biology (11945)
  • Clinical Trials (138)
  • Developmental Biology (6763)
  • Ecology (10401)
  • Epidemiology (2065)
  • Evolutionary Biology (13867)
  • Genetics (9708)
  • Genomics (13073)
  • Immunology (8146)
  • Microbiology (20014)
  • Molecular Biology (7853)
  • Neuroscience (43058)
  • Paleontology (320)
  • Pathology (1279)
  • Pharmacology and Toxicology (2258)
  • Physiology (3353)
  • Plant Biology (7232)
  • Scientific Communication and Education (1312)
  • Synthetic Biology (2006)
  • Systems Biology (5538)
  • Zoology (1128)