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Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study
View ORCID ProfileRonan M. Doyle, Denise M. O’Sullivan, Sean D. Aller, Sebastian Bruchmann, Taane Clark, Andreu Coello Pelegrin, Martin Cormican, Ernest Diez Benavente, Matthew J. Ellington, Elaine McGrath, Yair Motro, Thi Phuong Thuy Nguyen, Jody Phelan, View ORCID ProfileLiam P. Shaw, Richard A. Stabler, Alex van Belkum, View ORCID ProfileLucy van Dorp, Neil Woodford, Jacob Moran-Gilad, Jim F. Huggett, Kathryn A. Harris
doi: https://doi.org/10.1101/793885
Ronan M. Doyle
1Clinical Research Department, London School of Hygiene & Tropical Medicine, London, UK
2Microbiology Department, Great Ormond Street Hospital NHS Foundation Trust, London, UK
Denise M. O’Sullivan
3Molecular and Cell Biology Team, National Measurement Laboratory, Queens Road, Teddington, Middlesex, UK
Sean D. Aller
4Institute for Infection and Immunity, St George’s, University of London, Cranmer Terrace, London, UK
Sebastian Bruchmann
5Pathogen Genomics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK
Taane Clark
6Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
Andreu Coello Pelegrin
7bioMérieux, Clinical Unit, La Balme Les Grottes, France
8Vaccine & Infectious Disease Institute, Laboratory of Medical Microbiology, Faculty of Medicine and Health Sciences, University of Antwerp, Antwerp, Belgium
Martin Cormican
9National University of Ireland Galway, Galway, Ireland
Ernest Diez Benavente
6Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
Matthew J. Ellington
10NIS Laboratories, National Infection Service, Public Health England, London, UK
Elaine McGrath
11Carbapenemase-Producing Enterobacterales Reference Laboratory, Department of Medical Microbiology, University Hospital Galway, Galway, Ireland
Yair Motro
12School of Public Health, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel
Thi Phuong Thuy Nguyen
13Department of BioNano Technology, College of BioNano Technology, Gachon University, Seoul, Republic of Korea
Jody Phelan
6Department of Infection Biology, London School of Hygiene & Tropical Medicine, London, UK
Liam P. Shaw
14Nuffield Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK
Richard A. Stabler
15AMR Centre, London School of Hygiene & Tropical Medicine, London, UK
Alex van Belkum
7bioMérieux, Clinical Unit, La Balme Les Grottes, France
Lucy van Dorp
16UCL Genetics Institute, Department of Genetics, Evolution & Environment, University College London, Gower Street, London, UK
Neil Woodford
10NIS Laboratories, National Infection Service, Public Health England, London, UK
Jacob Moran-Gilad
12School of Public Health, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel
Jim F. Huggett
3Molecular and Cell Biology Team, National Measurement Laboratory, Queens Road, Teddington, Middlesex, UK
17School of Biosciences & Medicine, Faculty of Health & Medical Science, University of Surrey, Guildford, UK
Kathryn A. Harris
2Microbiology Department, Great Ormond Street Hospital NHS Foundation Trust, London, UK
Posted October 08, 2019.
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study
Ronan M. Doyle, Denise M. O’Sullivan, Sean D. Aller, Sebastian Bruchmann, Taane Clark, Andreu Coello Pelegrin, Martin Cormican, Ernest Diez Benavente, Matthew J. Ellington, Elaine McGrath, Yair Motro, Thi Phuong Thuy Nguyen, Jody Phelan, Liam P. Shaw, Richard A. Stabler, Alex van Belkum, Lucy van Dorp, Neil Woodford, Jacob Moran-Gilad, Jim F. Huggett, Kathryn A. Harris
bioRxiv 793885; doi: https://doi.org/10.1101/793885
Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: An inter-laboratory study
Ronan M. Doyle, Denise M. O’Sullivan, Sean D. Aller, Sebastian Bruchmann, Taane Clark, Andreu Coello Pelegrin, Martin Cormican, Ernest Diez Benavente, Matthew J. Ellington, Elaine McGrath, Yair Motro, Thi Phuong Thuy Nguyen, Jody Phelan, Liam P. Shaw, Richard A. Stabler, Alex van Belkum, Lucy van Dorp, Neil Woodford, Jacob Moran-Gilad, Jim F. Huggett, Kathryn A. Harris
bioRxiv 793885; doi: https://doi.org/10.1101/793885
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