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Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data
Jovan Tanevski, Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, View ORCID ProfileChang Shu, Ke Xu, Xiaoyu Liang, Ying Hu, Hoang V.V. Pham, Li Xiaomei, Thuc D. Le, Adi L. Tarca, Gaurav Bhatti, Roberto Romero, Nestoras Karathanasis, Phillipe Loher, Yang Chen, Zhengqing Ouyang, Disheng Mao, Yuping Zhang, Maryam Zand, Jianhua Ruan, View ORCID ProfileChristoph Hafemeister, View ORCID ProfilePeng Qiu, Duc Tran, Tin Nguyen, Attila Gabor, Thomas Yu, Enrico Glaab, Roland Krause, Peter Banda, DREAM SCTC Consortium, Gustavo Stolovitzky, Nikolaus Rajewsky, View ORCID ProfileJulio Saez-Rodriguez, View ORCID ProfilePablo Meyer
doi: https://doi.org/10.1101/796029
Jovan Tanevski
1Institute for Computational Biomedicine, Faculty of Medicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, Germany
2Department of Knowledge Technologies, Jožef Stefan Institute, Ljubljana, Slovenia
Thin Nguyen
3Deakin University, Geelong, Australia
Buu Truong
4University of South Australia, Mawson Lakes, Australia
Nikos Karaiskos
5Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
Mehmet Eren Ahsen
6Icahn School of Medicine at Mount Sinai, New York City, NY, USA
7University of Illinois, Urbana-Champagne, IL, USA
Xinyu Zhang
8Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA
Chang Shu
8Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA
Ke Xu
8Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA
Xiaoyu Liang
8Department of Psychiatry, Yale School of Medicine, New Haven, CT, USA
Ying Hu
9Center for Biomedical Informatics & Information Technology, National Cancer Institute, MD, USA
Hoang V.V. Pham
4University of South Australia, Mawson Lakes, Australia
Li Xiaomei
4University of South Australia, Mawson Lakes, Australia
Thuc D. Le
4University of South Australia, Mawson Lakes, Australia
Adi L. Tarca
10Wayne State University, Detroit, MI, USA
Gaurav Bhatti
10Wayne State University, Detroit, MI, USA
Roberto Romero
11Perinatology Research Branch, NICHD/NIH/DHHS, Bethesda, MD, and Detroit, MI, USA
Nestoras Karathanasis
12Computational Medicine Center, Thomas Jefferson University, Philadelphia, PA, USA
Phillipe Loher
12Computational Medicine Center, Thomas Jefferson University, Philadelphia, PA, USA
Yang Chen
13The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
Zhengqing Ouyang
14University of Massachusetts, Amherst, MA, USA
Disheng Mao
15University of Connecticut, CT, USA
Yuping Zhang
15University of Connecticut, CT, USA
Maryam Zand
16University of Texas at San Antonio, TX, USA
Jianhua Ruan
16University of Texas at San Antonio, TX, USA
Christoph Hafemeister
17New York Genome Center, New York City, NY, USA
Peng Qiu
18Georgia Institute of Technology, Atlanta, GA, USA
19Emory University, Atlanta, GA, USA
Duc Tran
20University of Nevada, Reno, NV, USA
Tin Nguyen
20University of Nevada, Reno, NV, USA
Attila Gabor
1Institute for Computational Biomedicine, Faculty of Medicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, Germany
Thomas Yu
21Sage Bionetworks,Seattle,WA USA
Enrico Glaab
22Biomedical Data Science Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur Alzette, Luxembourg
Roland Krause
23Bioinformatics Core Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur Alzette, Luxembourg
Peter Banda
23Bioinformatics Core Group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur Alzette, Luxembourg
Gustavo Stolovitzky
24IBM T.J. Watson Research Center, Yorktown Heights, NY, USA
Nikolaus Rajewsky
5Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany
Julio Saez-Rodriguez
1Institute for Computational Biomedicine, Faculty of Medicine, Heidelberg University Hospital and Heidelberg University, Heidelberg, Germany
25Joint Research Centre for Computational Biomedicine, Faculty of Medicine, RWTH Aachen University, Aachen, Germany
Pablo Meyer
24IBM T.J. Watson Research Center, Yorktown Heights, NY, USA
Article usage
Posted October 10, 2019.
Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data
Jovan Tanevski, Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, Chang Shu, Ke Xu, Xiaoyu Liang, Ying Hu, Hoang V.V. Pham, Li Xiaomei, Thuc D. Le, Adi L. Tarca, Gaurav Bhatti, Roberto Romero, Nestoras Karathanasis, Phillipe Loher, Yang Chen, Zhengqing Ouyang, Disheng Mao, Yuping Zhang, Maryam Zand, Jianhua Ruan, Christoph Hafemeister, Peng Qiu, Duc Tran, Tin Nguyen, Attila Gabor, Thomas Yu, Enrico Glaab, Roland Krause, Peter Banda, DREAM SCTC Consortium, Gustavo Stolovitzky, Nikolaus Rajewsky, Julio Saez-Rodriguez, Pablo Meyer
bioRxiv 796029; doi: https://doi.org/10.1101/796029
Predicting cellular position in the Drosophila embryo from Single-Cell Transcriptomics data
Jovan Tanevski, Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, Chang Shu, Ke Xu, Xiaoyu Liang, Ying Hu, Hoang V.V. Pham, Li Xiaomei, Thuc D. Le, Adi L. Tarca, Gaurav Bhatti, Roberto Romero, Nestoras Karathanasis, Phillipe Loher, Yang Chen, Zhengqing Ouyang, Disheng Mao, Yuping Zhang, Maryam Zand, Jianhua Ruan, Christoph Hafemeister, Peng Qiu, Duc Tran, Tin Nguyen, Attila Gabor, Thomas Yu, Enrico Glaab, Roland Krause, Peter Banda, DREAM SCTC Consortium, Gustavo Stolovitzky, Nikolaus Rajewsky, Julio Saez-Rodriguez, Pablo Meyer
bioRxiv 796029; doi: https://doi.org/10.1101/796029
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