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G-Graph: An interactive genomic graph viewer

Peter A. Andrews, Joan Alexander, Jude Kendall, Michael Wigler
doi: https://doi.org/10.1101/803015
Peter A. Andrews
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA 11724
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  • For correspondence: paa@drpa.us
Joan Alexander
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA 11724
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Jude Kendall
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA 11724
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Michael Wigler
Simons Center for Quantitative Biology, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA 11724
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Abstract

Motivation Effective and efficient exploration of numeric data and annotations as a function of genomic position requires specialized software.

Results We present G-Graph, an interactive genomic scatter plot viewer. G-Graph stacks or tiles multiple data series in one graph using different colors and markers. It displays gene annotation and other metadata, allows easy changes to the appearance of data series, implements stack-based undo functionality, and saves user-selected application views as image and pdf files. G-Graph delivers smooth and rapid scrolling and zooming even for datasets with millions of points and line segments. The primary target user is a researcher examining many copy number profiles to identify potentially deleterious variants. G-Graph runs under Linux, Mac OSX and Windows.

Availability https://github.com/docpaa/mumdex/ or https://mumdex.com/ggraph/

Contact andrewsp{at}cshl.edu (or paa{at}drpa.us)

Footnotes

  • https://mumdex.com/ggraph/

  • https://github.com/docpaa/mumdex/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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Posted November 18, 2019.
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G-Graph: An interactive genomic graph viewer
Peter A. Andrews, Joan Alexander, Jude Kendall, Michael Wigler
bioRxiv 803015; doi: https://doi.org/10.1101/803015
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G-Graph: An interactive genomic graph viewer
Peter A. Andrews, Joan Alexander, Jude Kendall, Michael Wigler
bioRxiv 803015; doi: https://doi.org/10.1101/803015

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