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Minimal lactazole scaffold for in vitro production of pseudo-natural thiopeptides

View ORCID ProfileAlexander A. Vinogradov, Morito Shimomura, View ORCID ProfileYuki Goto, Taro Ozaki, View ORCID ProfileShumpei Asamizu, Yoshinori Sugai, View ORCID ProfileHiroaki Suga, Hiroyasu Onaka
doi: https://doi.org/10.1101/807206
Alexander A. Vinogradov
1Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
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Morito Shimomura
2Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
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Yuki Goto
1Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
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  • For correspondence: aonaka@mail.ecc.u-tokyo.ac.jp hsuga@chem.s.u-tokyo.ac.jp y-goto@chem.s.u-tokyo.ac.jp
Taro Ozaki
2Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
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Shumpei Asamizu
2Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
3Collaborative Research Institute for Innovative Microbiology, The University of Tokyo 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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Yoshinori Sugai
2Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
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Hiroaki Suga
1Department of Chemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan
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  • ORCID record for Hiroaki Suga
  • For correspondence: aonaka@mail.ecc.u-tokyo.ac.jp hsuga@chem.s.u-tokyo.ac.jp y-goto@chem.s.u-tokyo.ac.jp
Hiroyasu Onaka
2Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
3Collaborative Research Institute for Innovative Microbiology, The University of Tokyo 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan
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  • For correspondence: aonaka@mail.ecc.u-tokyo.ac.jp hsuga@chem.s.u-tokyo.ac.jp y-goto@chem.s.u-tokyo.ac.jp
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Abstract

Lactazole A is a cryptic thiopeptide from Streptomyces lactacystinaeus, encoded by a compact 9.8 kb biosynthetic gene cluster. Here, we established a platform for in vitro biosynthesis of lactazole A, referred to as the FIT-Laz system, via a combination of the flexible in vitro translation (FIT) system with recombinantly produced lactazole biosynthetic enzymes. Systematic dissection of lactazole biosynthesis revealed remarkable substrate tolerance of the biosynthetic enzymes, and led to the development of the “minimal lactazole scaffold”, a construct requiring only 6 post-translational modifications for macrocyclization. Efficient assembly of such minimal thiopeptides with FIT-Laz enabled access to diverse lactazole analogs with 10 consecutive mutations, 14- to 62-membered macrocycles, and up to 18 amino acid-long tail regions. Moreover, utilizing genetic code reprogramming, we demonstrated synthesis of pseudo-natural lactazoles containing 4 non-proteinogenic amino acids. This work opens possibilities in exploring novel sequence space of pseudo-natural thiopeptides.

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Posted October 16, 2019.
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Minimal lactazole scaffold for in vitro production of pseudo-natural thiopeptides
Alexander A. Vinogradov, Morito Shimomura, Yuki Goto, Taro Ozaki, Shumpei Asamizu, Yoshinori Sugai, Hiroaki Suga, Hiroyasu Onaka
bioRxiv 807206; doi: https://doi.org/10.1101/807206
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Minimal lactazole scaffold for in vitro production of pseudo-natural thiopeptides
Alexander A. Vinogradov, Morito Shimomura, Yuki Goto, Taro Ozaki, Shumpei Asamizu, Yoshinori Sugai, Hiroaki Suga, Hiroyasu Onaka
bioRxiv 807206; doi: https://doi.org/10.1101/807206

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