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Granulins modulate liquid-liquid phase separation and aggregation of TDP-43 C-terminal domain

Anukool A. Bhopatkar, Vladimir N. Uversky, Vijayaraghavan Rangachari
doi: https://doi.org/10.1101/812115
Anukool A. Bhopatkar
*Department of Chemistry and Biochemistry, School of Mathematics and Natural Sciences, University of Southern Mississippi, Hattiesburg, MS 39406
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Vladimir N. Uversky
#Department of Molecular Medicine and Byrd Alzheimer’s Research Institute, Morsani College of Medicine, University of South Florida, Tampa, FL, 33620, USA
§Laboratory of New Methods in Biology, Institute for Biological Instrumentation, Russian Academy of Sciences, 142290 Pushchino, Moscow Region, Russia
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Vijayaraghavan Rangachari
*Department of Chemistry and Biochemistry, School of Mathematics and Natural Sciences, University of Southern Mississippi, Hattiesburg, MS 39406
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  • For correspondence: vijay.rangachari@um.edu
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ABSTRACT

Tar DNA binding protein (TDP-43) has emerged as a key player in many neurodegenerative pathologies including frontotemporal lobar degeneration (FTLD) and amyotropic lateral sclerosis (ALS). Important hallmarks of FTLD and ALS are the toxic cytoplasmic inclusions of C-terminal fragments of TDP-43 (TDP-43CTD), which are formed upon proteolytic cleavage of full-length TDP-43 in the nucleus and subsequent transport to the cytoplasm. TDP-43CTD is also known to form stress granules (SGs) by coacervating with RNA in cytoplasm under stress conditions and are believed to be involved in modulating the pathologies. Among other factors affecting these pathologies, the pleiotropic protein called progranulin (PGRN) has gained significant attention lately. The haploinsufficiency of PGRN, caused by autosomal dominant mutations in GRN gene, results in its loss-of-function linked to FTLD and ALS. But precisely how the protein contributes to the pathology remains unknown. Recently, cleavage to GRNs were observed to be a significant part of FTLD and ALS progression with specific GRNs exacerbating TDP-43-induced toxicity in C.elegans. In this report, we show that GRNs −3 and −5 directly interact with TDP-43CTD to modulate latter’s aggregation or stress granule formation in disparate ways in vitro. These results constitute the first observation of direct interaction between GRNs and TDP-43 and suggest a mechanism by which the loss of PGRN function could lead to FTLD and ALS.

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Posted October 20, 2019.
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Granulins modulate liquid-liquid phase separation and aggregation of TDP-43 C-terminal domain
Anukool A. Bhopatkar, Vladimir N. Uversky, Vijayaraghavan Rangachari
bioRxiv 812115; doi: https://doi.org/10.1101/812115
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Granulins modulate liquid-liquid phase separation and aggregation of TDP-43 C-terminal domain
Anukool A. Bhopatkar, Vladimir N. Uversky, Vijayaraghavan Rangachari
bioRxiv 812115; doi: https://doi.org/10.1101/812115

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