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Characterization of a Human Liver NIST Reference Material fit for Proteomics Applications

View ORCID ProfileW. Clay Davis, Lisa E. Kilpatrick, Debra L. Ellisor, View ORCID ProfileBenjamin A. Neely
doi: https://doi.org/10.1101/834663
W. Clay Davis
1National Institute of Standards and Technology, Material Measurement Laboratory, Chemical Sciences Division, Charleston, South Carolina, 29412, USA
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  • For correspondence: clay.davis@nist.gov
Lisa E. Kilpatrick
2National Institute of Standards and Technology, Material Measurement Laboratory, Biomolecular Measurement Division, 100 Bureau Drive, Stop 8314, Gaithersburg, Maryland 2089, USA
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Debra L. Ellisor
1National Institute of Standards and Technology, Material Measurement Laboratory, Chemical Sciences Division, Charleston, South Carolina, 29412, USA
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Benjamin A. Neely
1National Institute of Standards and Technology, Material Measurement Laboratory, Chemical Sciences Division, Charleston, South Carolina, 29412, USA
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  • ORCID record for Benjamin A. Neely
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Abstract

The National Institute of Standards and Technology (NIST) is creating new, economical, qualitative reference materials and data for proteomics comparisons, benchmarking and harmonization. Here we describe a large dataset from shotgun proteomic analysis of RM 8461 Human Liver for Proteomics, a reference material being developed. Consensus identifications using multiple search engines and sample preparations demonstrate a homogeneous and fit-for-purpose material that can be incorporated into automated or manual sample preparation workflows, with the resulting data used to directly assess complete sample-to-data workflows and provide harmonization and benchmarking between laboratories and techniques. Data are available via PRIDE with identifier PXD013608.

Footnotes

  • https://www.ebi.ac.uk/pride/archive/projects/PXD013608

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license.
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Posted November 08, 2019.
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Characterization of a Human Liver NIST Reference Material fit for Proteomics Applications
W. Clay Davis, Lisa E. Kilpatrick, Debra L. Ellisor, Benjamin A. Neely
bioRxiv 834663; doi: https://doi.org/10.1101/834663
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Characterization of a Human Liver NIST Reference Material fit for Proteomics Applications
W. Clay Davis, Lisa E. Kilpatrick, Debra L. Ellisor, Benjamin A. Neely
bioRxiv 834663; doi: https://doi.org/10.1101/834663

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