Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch
doi: https://doi.org/10.1101/835900
Sergio Arredondo-Alonso
1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Martin Bootsma
2Julius Center for Health Sciences and Primary Care of the UMC Utrecht, Utrecht University, Utrecht, The Netherlands
3Department of Mathematics, Faculty of Sciences, Utrecht University, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yaïr Hein
3Department of Mathematics, Faculty of Sciences, Utrecht University, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Malbert R.C. Rogers
1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jukka Corander
4Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge CB10 1SA, UK
5Department of Biostatistics, University of Oslo, 0317 Oslo, Norway
6Department of Mathematics and Statistics, Helsinki Institute of Information Technology (HIIT), FI-00014 University of Helsinki, Finland
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Rob JL Willems
1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Anita C. Schürch
1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: a.c.schurch@umcutrecht.nl
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Article Information

doi 
https://doi.org/10.1101/835900
History 
  • November 8, 2019.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.

Author Information

  1. Sergio Arredondo-Alonso1,
  2. Martin Bootsma2,3,
  3. Yaïr Hein3,
  4. Malbert R.C. Rogers1,
  5. Jukka Corander4,5,6,
  6. Rob JL Willems1 and
  7. Anita C. Schürch1,*
  1. 1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands
  2. 2Julius Center for Health Sciences and Primary Care of the UMC Utrecht, Utrecht University, Utrecht, The Netherlands
  3. 3Department of Mathematics, Faculty of Sciences, Utrecht University, Utrecht, The Netherlands
  4. 4Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge CB10 1SA, UK
  5. 5Department of Biostatistics, University of Oslo, 0317 Oslo, Norway
  6. 6Department of Mathematics and Statistics, Helsinki Institute of Information Technology (HIIT), FI-00014 University of Helsinki, Finland
  1. ↵*To whom correspondence should be addressed.; email: a.c.schurch{at}umcutrecht.nl
Back to top
PreviousNext
Posted November 08, 2019.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
gplas: a comprehensive tool for plasmid analysis using short-read graphs
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
gplas: a comprehensive tool for plasmid analysis using short-read graphs
Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch
bioRxiv 835900; doi: https://doi.org/10.1101/835900
Reddit logo Twitter logo Facebook logo LinkedIn logo Mendeley logo
Citation Tools
gplas: a comprehensive tool for plasmid analysis using short-read graphs
Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch
bioRxiv 835900; doi: https://doi.org/10.1101/835900

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (4246)
  • Biochemistry (9173)
  • Bioengineering (6806)
  • Bioinformatics (24064)
  • Biophysics (12158)
  • Cancer Biology (9565)
  • Cell Biology (13825)
  • Clinical Trials (138)
  • Developmental Biology (7660)
  • Ecology (11737)
  • Epidemiology (2066)
  • Evolutionary Biology (15544)
  • Genetics (10672)
  • Genomics (14362)
  • Immunology (9515)
  • Microbiology (22910)
  • Molecular Biology (9131)
  • Neuroscience (49156)
  • Paleontology (358)
  • Pathology (1487)
  • Pharmacology and Toxicology (2584)
  • Physiology (3851)
  • Plant Biology (8351)
  • Scientific Communication and Education (1473)
  • Synthetic Biology (2301)
  • Systems Biology (6206)
  • Zoology (1303)