gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso; Martin Bootsma; Yaïr Hein; Malbert R.C. Rogers; Jukka Corander; Rob JL Willems; Anita C. Schürch

doi:10.1101/835900

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gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch

doi: https://doi.org/10.1101/835900

Sergio Arredondo-Alonso

1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands

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Martin Bootsma

2Julius Center for Health Sciences and Primary Care of the UMC Utrecht, Utrecht University, Utrecht, The Netherlands

3Department of Mathematics, Faculty of Sciences, Utrecht University, Utrecht, The Netherlands

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Yaïr Hein

3Department of Mathematics, Faculty of Sciences, Utrecht University, Utrecht, The Netherlands

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Malbert R.C. Rogers

1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands

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Jukka Corander

4Pathogen Genomics, Wellcome Trust Sanger Institute, Cambridge CB10 1SA, UK

5Department of Biostatistics, University of Oslo, 0317 Oslo, Norway

6Department of Mathematics and Statistics, Helsinki Institute of Information Technology (HIIT), FI-00014 University of Helsinki, Finland

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Rob JL Willems

1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands

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Anita C. Schürch

1Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands

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For correspondence: a.c.schurch@umcutrecht.nl

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gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch

bioRxiv 835900; doi: https://doi.org/10.1101/835900

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gplas: a comprehensive tool for plasmid analysis using short-read graphs

Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch

bioRxiv 835900; doi: https://doi.org/10.1101/835900

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