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Mesmerize: A highly versatile platform for calcium imaging analysis and creation of self-contained FAIR datasets

View ORCID ProfileKushal Kolar, Daniel Dondorp, View ORCID ProfileMarios Chatzigeorgiou
doi: https://doi.org/10.1101/840488
Kushal Kolar
1Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt. 55, 5006 Bergen, Norway
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  • ORCID record for Kushal Kolar
  • For correspondence: kushalkolar@gmail.com Marios.Chatzigeorgiou@uib.no
Daniel Dondorp
1Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt. 55, 5006 Bergen, Norway
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Marios Chatzigeorgiou
1Sars International Centre for Marine Molecular Biology, University of Bergen, Thormøhlensgt. 55, 5006 Bergen, Norway
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  • ORCID record for Marios Chatzigeorgiou
  • For correspondence: kushalkolar@gmail.com Marios.Chatzigeorgiou@uib.no
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Abstract

We present an efficient and expandable calcium imaging analysis platform that encapsulates the entire analysis process from raw data to interactive e-figures. It provides a graphical interface to the latest analysis methods for pre-processing, and signal extraction. We demonstrate how Mesmerize can be applied to a broad range of scientific questions by using datasets ranging from the mouse visual cortex, neurons, epidermis and TLCs of the protochordate C. intestinalis, and C. elegans.

Footnotes

  • https://doi.org/10.6084/m9.figshare.10289162

  • https://doi.org/10.6084/m9.figshare.10287113

  • https://doi.org/10.6084/m9.figshare.10293041

  • http://mesmerizelab.org/

  • https://github.com/kushalkolar/MESmerize

  • https://github.com/kushalkolar/mesmerize_manuscript_notebooks

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
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Posted November 13, 2019.
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Mesmerize: A highly versatile platform for calcium imaging analysis and creation of self-contained FAIR datasets
Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
bioRxiv 840488; doi: https://doi.org/10.1101/840488
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Mesmerize: A highly versatile platform for calcium imaging analysis and creation of self-contained FAIR datasets
Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou
bioRxiv 840488; doi: https://doi.org/10.1101/840488

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