Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Adenita: Interactive 3D modeling and visualization of DNA Nanostructures

View ORCID ProfileElisa de Llano, Haichao Miao, Yasaman Ahmadi, Amanda J. Wilson, Morgan Beeby, Ivan Viola, Ivan Barisic
doi: https://doi.org/10.1101/849976
Elisa de Llano
1Center for Health and Bioresources, Austrian Institute of Technology, Austria
2Computational Physics Group, University of Vienna, Austria
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Elisa de Llano
  • For correspondence: elisa.dellano@univie.ac.at
Haichao Miao
1Center for Health and Bioresources, Austrian Institute of Technology, Austria
3Institute for Computer Graphics, TU Wien, Austria
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yasaman Ahmadi
1Center for Health and Bioresources, Austrian Institute of Technology, Austria
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Amanda J. Wilson
4Department of Life Sciences, Imperial College London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Morgan Beeby
4Department of Life Sciences, Imperial College London, UK
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ivan Viola
5Visual Computing Center, King Abdullah University of Science and Technology (KAUST), Saudi Arabia
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Ivan Barisic
1Center for Health and Bioresources, Austrian Institute of Technology, Austria
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Supplementary material
  • Preview PDF
Loading

Abstract

We present Adenita, a novel software tool for the design of DNA nanostructures in a user-friendly integrated environment for molecular modeling. Adenita is capable of handling large DNA origami structures, re-use them as building blocks of new designs and provide on demand feedback, thus overcoming effectively some of the limitations of existing tools. Additionally, it integrates all major established approaches to DNA nanostructure design (DNA origami, wireframe nanostructures and DNA tiles) and allows to combine them. We show-case Adenita by re-using a large nanorod designed with Cadnano [1] to create a new nanostructure through user interactions that employ different editors to modify the original nanorod.

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
Back to top
PreviousNext
Posted November 29, 2019.
Download PDF

Supplementary Material

Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Adenita: Interactive 3D modeling and visualization of DNA Nanostructures
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Adenita: Interactive 3D modeling and visualization of DNA Nanostructures
Elisa de Llano, Haichao Miao, Yasaman Ahmadi, Amanda J. Wilson, Morgan Beeby, Ivan Viola, Ivan Barisic
bioRxiv 849976; doi: https://doi.org/10.1101/849976
Digg logo Reddit logo Twitter logo Facebook logo Google logo LinkedIn logo Mendeley logo
Citation Tools
Adenita: Interactive 3D modeling and visualization of DNA Nanostructures
Elisa de Llano, Haichao Miao, Yasaman Ahmadi, Amanda J. Wilson, Morgan Beeby, Ivan Viola, Ivan Barisic
bioRxiv 849976; doi: https://doi.org/10.1101/849976

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Bioinformatics
Subject Areas
All Articles
  • Animal Behavior and Cognition (3686)
  • Biochemistry (7781)
  • Bioengineering (5672)
  • Bioinformatics (21253)
  • Biophysics (10565)
  • Cancer Biology (8165)
  • Cell Biology (11916)
  • Clinical Trials (138)
  • Developmental Biology (6744)
  • Ecology (10391)
  • Epidemiology (2065)
  • Evolutionary Biology (13847)
  • Genetics (9698)
  • Genomics (13060)
  • Immunology (8131)
  • Microbiology (19973)
  • Molecular Biology (7839)
  • Neuroscience (42997)
  • Paleontology (318)
  • Pathology (1276)
  • Pharmacology and Toxicology (2257)
  • Physiology (3350)
  • Plant Biology (7217)
  • Scientific Communication and Education (1309)
  • Synthetic Biology (2000)
  • Systems Biology (5529)
  • Zoology (1126)