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Slicing the genome of star-fruit (Averrhoa carambola L.)

View ORCID ProfileYannan Fan, View ORCID ProfileSunil Kumar Sahu, Ting Yang, View ORCID ProfileWeixue Mu, View ORCID ProfileJinpu Wei, Le Cheng, Jinlong Yang, Xun Xu, Xin Liu, Ranchang Mu, Jie Liu, Jianming Zhao, Yuxian Zhao, Huan Liu
doi: https://doi.org/10.1101/851790
Yannan Fan
1 BGI-Shenzhen;
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  • For correspondence: fanyannan@genomics.cn
Sunil Kumar Sahu
1 BGI-Shenzhen;
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  • For correspondence: sunilkumarsahu@genomics.cn
Ting Yang
1 BGI-Shenzhen;
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Weixue Mu
1 BGI-Shenzhen;
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Jinpu Wei
1 BGI-Shenzhen;
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Le Cheng
2 BGI-Yunnan;
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Jinlong Yang
2 BGI-Yunnan;
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Xun Xu
3 Guangdong Provincial Key Laboratory of Genome Read and Write;
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Xin Liu
1 BGI-Shenzhen;
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Ranchang Mu
4 Forestry Bureau of Ruili;
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Jie Liu
4 Forestry Bureau of Ruili;
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Jianming Zhao
4 Forestry Bureau of Ruili;
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Yuxian Zhao
5 Chinese Academy of Forestry
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Huan Liu
1 BGI-Shenzhen;
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  • For correspondence: liuhuan@genomics.cn
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Abstract

The Averrhoa carambola is commonly known as star fruit because of its peculiar shape and its fruit is a rich source of minerals and vitamins. It is also used in traditional medicines in countries like India, China, the Philippines, and Brazil for treating various ailments such as fever, diarrhea, vomiting, and skin disease. Here we present the first draft genome of the Oxalidaceae family with an assembled genome size of 470.51 Mb. In total, 24,726 protein-coding genes were identified and 16,490 genes were annotated using various well-known databases. The phylogenomic analysis confirmed the evolutionary position of the Oxalidaceae family. Based on the gene functional annotations, we also discovered the enzymes possibly involved in the important nutritional pathways in star fruit genome. Overall, being the first sequenced genome in the Oxalidaceae family, the data provides an essential resource for the nutritional, medicinal, and cultivational studies for this economically important star-fruit plant.

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Posted January 28, 2020.
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Slicing the genome of star-fruit (Averrhoa carambola L.)
Yannan Fan, Sunil Kumar Sahu, Ting Yang, Weixue Mu, Jinpu Wei, Le Cheng, Jinlong Yang, Xun Xu, Xin Liu, Ranchang Mu, Jie Liu, Jianming Zhao, Yuxian Zhao, Huan Liu
bioRxiv 851790; doi: https://doi.org/10.1101/851790
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Slicing the genome of star-fruit (Averrhoa carambola L.)
Yannan Fan, Sunil Kumar Sahu, Ting Yang, Weixue Mu, Jinpu Wei, Le Cheng, Jinlong Yang, Xun Xu, Xin Liu, Ranchang Mu, Jie Liu, Jianming Zhao, Yuxian Zhao, Huan Liu
bioRxiv 851790; doi: https://doi.org/10.1101/851790

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