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S-nitrosylation affects TRAP1 structure and ATPase activity and modulates cell response to apoptotic stimuli

Fiorella Faienza, Matteo Lambrughi, Salvatore Rizza, Chiara Pecorari, Paola Giglio, Juan Salamanca Viloria, Maria Francesca Allega, Giovanni Chiappetta, Joëlle Vinh, Francesca Pacello, Andrea Battistoni, Andrea Rasola, Elena Papaleo, Giuseppe Filomeni
doi: https://doi.org/10.1101/859629
Fiorella Faienza
Department of Biology, Tor Vergata University of Rome, 00133 Rome, Italy
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Matteo Lambrughi
Computational Biology Laboratory, Center of Excellence in Autophagy, Recycling and Disease (CARD), Danish Cancer Society Research Center, 2100, Copenhagen, Denmark
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Salvatore Rizza
Redox Signaling and Oxidative Stress Group, Danish Cancer Society Research Center, 2100 Copenhagen, Denmark
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Chiara Pecorari
Department of Biology, Tor Vergata University of Rome, 00133 Rome, ItalyRedox Signaling and Oxidative Stress Group, Danish Cancer Society Research Center, 2100 Copenhagen, Denmark
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Paola Giglio
Department of Biology, Tor Vergata University of Rome, 00133 Rome, Italy
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Juan Salamanca Viloria
Computational Biology Laboratory, Center of Excellence in Autophagy, Recycling and Disease (CARD), Danish Cancer Society Research Center, 2100, Copenhagen, Denmark
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Maria Francesca Allega
Computational Biology Laboratory, Center of Excellence in Autophagy, Recycling and Disease (CARD), Danish Cancer Society Research Center, 2100, Copenhagen, DenmarkRedox Signaling and Oxidative Stress Group, Danish Cancer Society Research Center, 2100 Copenhagen, Denmark
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Giovanni Chiappetta
Laboratory of Proteomics and Biological Mass Spectrometry, USR 3149 CNRS - ESPCI Paris, PSL University, 10 rue Vauquelin, Paris cedex 05 75231, France
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Joëlle Vinh
Laboratory of Proteomics and Biological Mass Spectrometry, USR 3149 CNRS - ESPCI Paris, PSL University, 10 rue Vauquelin, Paris cedex 05 75231, France
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Francesca Pacello
Department of Biology, Tor Vergata University of Rome, 00133 Rome, Italy
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Andrea Battistoni
Department of Biology, Tor Vergata University of Rome, 00133 Rome, Italy
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Andrea Rasola
Department of Biomedical Sciences, University of Padova, Padova, Italy
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Elena Papaleo
Computational Biology Laboratory, Center of Excellence in Autophagy, Recycling and Disease (CARD), Danish Cancer Society Research Center, 2100, Copenhagen, DenmarkNovo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
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  • For correspondence: elenap@cancer.dk giufil@cancer.dk filomeni@bio.uniroma2.it
Giuseppe Filomeni
Department of Biology, Tor Vergata University of Rome, 00133 Rome, ItalyRedox Signaling and Oxidative Stress Group, Danish Cancer Society Research Center, 2100 Copenhagen, Denmark
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  • For correspondence: elenap@cancer.dk giufil@cancer.dk filomeni@bio.uniroma2.it
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ABSTRACT

The mitochondrial chaperone TRAP1 has been involved in several mitochondrial functions, and modulation of its expression/activity has been suggested to play a role in the metabolic reprogramming distinctive of cancer cells. TRAP1 posttranslational modifications, i.e. phosphorylation, can modify its capability to bind to different client proteins and modulate its oncogenic activity. Recently, it has been also demonstrated that TRAP1 is S-nitrosylated at Cys501, a redox modification associated with its degradation via the proteasome. Here we report molecular dynamics simulations of TRAP1, together with analysis of long-range structural communication, providing a model according to which Cys501 S-nitrosylation induces conformational changes to distal sites in the structure of the protein. The modification is also predicted to alter open and closing motions for the chaperone function. By means of colorimetric assays and site directed mutagenesis aimed at generating C501S variant, we also experimentally confirmed that selective S-nitrosylation of Cys501 decreases ATPase activity of recombinant TRAP1. Coherently, C501S mutant was more active and conferred protection to cell death induced by staurosporine. Overall, our results provide the first in silico, in vitro and cellular evidence of the relevance of Cys501 S-nitrosylation in TRAP1 biology.

Footnotes

  • https://github.com/ELELAB/TRAP1_activity

  • https://osf.io/wytg2/

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
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Posted November 30, 2019.
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S-nitrosylation affects TRAP1 structure and ATPase activity and modulates cell response to apoptotic stimuli
Fiorella Faienza, Matteo Lambrughi, Salvatore Rizza, Chiara Pecorari, Paola Giglio, Juan Salamanca Viloria, Maria Francesca Allega, Giovanni Chiappetta, Joëlle Vinh, Francesca Pacello, Andrea Battistoni, Andrea Rasola, Elena Papaleo, Giuseppe Filomeni
bioRxiv 859629; doi: https://doi.org/10.1101/859629
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S-nitrosylation affects TRAP1 structure and ATPase activity and modulates cell response to apoptotic stimuli
Fiorella Faienza, Matteo Lambrughi, Salvatore Rizza, Chiara Pecorari, Paola Giglio, Juan Salamanca Viloria, Maria Francesca Allega, Giovanni Chiappetta, Joëlle Vinh, Francesca Pacello, Andrea Battistoni, Andrea Rasola, Elena Papaleo, Giuseppe Filomeni
bioRxiv 859629; doi: https://doi.org/10.1101/859629

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