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Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa

View ORCID ProfileChiara Rezzoagli, Martina Archetti, Ingrid Mignot, Michael Baumgartner, View ORCID ProfileRolf Kümmerli
doi: https://doi.org/10.1101/861799
Chiara Rezzoagli
1Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
2Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
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  • ORCID record for Chiara Rezzoagli
Martina Archetti
1Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
2Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
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Ingrid Mignot
1Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
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Michael Baumgartner
3Institute for Integrative Biology, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland
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Rolf Kümmerli
1Department of Quantitative Biomedicine, University of Zurich, Zurich, Switzerland
2Department of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland
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  • For correspondence: rolf.kuemmerli@uzh.ch
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Abstract

Antibiotics are losing efficacy due to the rapid evolution and spread of resistance. Treatments targeting bacterial virulence factors have been considered as alternatives because they target virulence instead of pathogen viability, and should therefore exert weaker selection for resistance than conventional antibiotics. However, antivirulence treatments rarely clear infections, which compromises their clinical applications. Here, we explore the potential of combining antivirulence drugs with antibiotics against the opportunistic human pathogen Pseudomonas aeruginosa. We combined two antivirulence compounds (gallium, a siderophore-quencher, and furanone C-30, a quorum sensing-inhibitor) together with four clinically relevant antibiotics (ciprofloxacin, colistin, meropenem, tobramycin) in 9×9 drug concentration matrices. We found that drug-interaction patterns were concentration dependent, with promising levels of synergies occurring at intermediate drug concentrations for certain drug pairs. We then tested whether antivirulence compounds are potent adjuvants, especially when treating antibiotic resistant clones. We found that the addition of antivirulence compounds to antibiotics could restore growth inhibition for most antibiotic resistant clones, and even abrogate or reverse selection for resistance in five drug combination cases. Molecular analyses suggest that selection against resistant clones occurs when resistance mechanisms involve restoration of protein synthesis, but not when efflux pumps are upregulated. Altogether, our work provides a first systematic analysis of antivirulence-antibiotic combinatorial treatments and suggests that such combinations have a high potential to be both effective in treating infections and in limiting the spread of antibiotic resistance.

Competing Interest Statement

The authors have declared no competing interest.

Footnotes

  • This revised version contains new data on (i) cross resistance and collateral sensitivity of antibiotic resistant clones to the antivirulence compounds (Figure 5, Supplementary Figure S5), and (ii) the effect of antivirulence compounds on the selection for or against antibiotic resistant clones (Figure 6).

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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Posted May 04, 2020.
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Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa
Chiara Rezzoagli, Martina Archetti, Ingrid Mignot, Michael Baumgartner, Rolf Kümmerli
bioRxiv 861799; doi: https://doi.org/10.1101/861799
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Combining antibiotics with antivirulence compounds can have synergistic effects and reverse selection for antibiotic resistance in Pseudomonas aeruginosa
Chiara Rezzoagli, Martina Archetti, Ingrid Mignot, Michael Baumgartner, Rolf Kümmerli
bioRxiv 861799; doi: https://doi.org/10.1101/861799

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