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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

View ORCID ProfileBrigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, View ORCID ProfileYadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P. Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W. Hall, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz
doi: https://doi.org/10.1101/862623
Brigitte T. Hofmeister
1Institute of Bioinformatics, University of Georgia, Athens, GA, USA
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  • ORCID record for Brigitte T. Hofmeister
Johanna Denkena
2Institute of Computational Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany
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Maria Colomé-Tatché
2Institute of Computational Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany
3European Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands
4TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany
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Yadollah Shahryary
5Department of Plant Sciences, Technical University of Munich, Liesel-Beckmann-Str. 2, Freising, Germany
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Rashmi Hazarika
5Department of Plant Sciences, Technical University of Munich, Liesel-Beckmann-Str. 2, Freising, Germany
6Institute for Advanced Study (IAS), Technical University of Munich, Lichtenbergstr. 2a, Garching, Germany
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Jane Grimwood
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Sujan Mamidi
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
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Jerry Jenkins
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
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Paul P. Grabowski
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
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Avinash Sreedasyam
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
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Shengqiang Shu
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Kerrie Barry
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Kathleen Lail
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Catherine Adam
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Anna Lipzen
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Rotem Sorek
9Department of Molecular Biology, Weizmann Institute of Science, Rehovot, Israel
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Dave Kudrna
10Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA
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Jayson Talag
10Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA
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Rod Wing
10Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA
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David W. Hall
11Department of Genetics, University of Georgia, Athens, GA, USA
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Gerald A. Tuskan
12The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN, USA
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Jeremy Schmutz
7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
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Frank Johannes
5Department of Plant Sciences, Technical University of Munich, Liesel-Beckmann-Str. 2, Freising, Germany
6Institute for Advanced Study (IAS), Technical University of Munich, Lichtenbergstr. 2a, Garching, Germany
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  • For correspondence: schmitz@uga.edu frank@johanneslab.org
Robert J. Schmitz
6Institute for Advanced Study (IAS), Technical University of Munich, Lichtenbergstr. 2a, Garching, Germany
11Department of Genetics, University of Georgia, Athens, GA, USA
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  • For correspondence: schmitz@uga.edu frank@johanneslab.org
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Article Information

doi 
https://doi.org/10.1101/862623
History 
  • December 3, 2019.
Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-ND 4.0 International license.

Author Information

  1. Brigitte T. Hofmeister1,
  2. Johanna Denkena2,
  3. Maria Colomé-Tatché2,3,4,
  4. Yadollah Shahryary5,
  5. Rashmi Hazarika5,6,
  6. Jane Grimwood7,8,
  7. Sujan Mamidi7,
  8. Jerry Jenkins7,
  9. Paul P. Grabowski7,
  10. Avinash Sreedasyam7,
  11. Shengqiang Shu8,
  12. Kerrie Barry8,
  13. Kathleen Lail8,
  14. Catherine Adam8,
  15. Anna Lipzen8,
  16. Rotem Sorek9,
  17. Dave Kudrna10,
  18. Jayson Talag10,
  19. Rod Wing10,
  20. David W. Hall11,
  21. Gerald A. Tuskan12,
  22. Jeremy Schmutz7,8,
  23. Frank Johannes5,6,* and
  24. Robert J. Schmitz6,11,*
  1. 1Institute of Bioinformatics, University of Georgia, Athens, GA, USA
  2. 2Institute of Computational Biology, Helmholtz Center Munich, German Research Center for Environmental Health, Neuherberg, Germany
  3. 3European Research Institute for the Biology of Ageing, University of Groningen, University Medical Centre Groningen, Groningen, The Netherlands
  4. 4TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany
  5. 5Department of Plant Sciences, Technical University of Munich, Liesel-Beckmann-Str. 2, Freising, Germany
  6. 6Institute for Advanced Study (IAS), Technical University of Munich, Lichtenbergstr. 2a, Garching, Germany
  7. 7HudsonAlpha Institute of Biotechnology, Huntsville, Alabama, USA
  8. 8Department of Energy Joint Genome Institute, Walnut Creek, California, USA
  9. 9Department of Molecular Biology, Weizmann Institute of Science, Rehovot, Israel
  10. 10Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ, USA
  11. 11Department of Genetics, University of Georgia, Athens, GA, USA
  12. 12The Center for Bioenergy Innovation, Oak Ridge National Laboratory, Oak Ridge, TN, USA
  1. ↵*CORRESPONDING AUTHORS: Robert J. Schmitz, schmitz{at}uga.edu and Frank Johannes, frank{at}johanneslab.org
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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P. Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W. Hall, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz
bioRxiv 862623; doi: https://doi.org/10.1101/862623
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The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P. Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W. Hall, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz
bioRxiv 862623; doi: https://doi.org/10.1101/862623

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