Skip to main content
bioRxiv
  • Home
  • About
  • Submit
  • ALERTS / RSS
Advanced Search
New Results

Standardized Effect Sizes and Image-Based Meta-Analytical Approaches for fMRI Data

View ORCID ProfileHan Bossier, View ORCID ProfileThomas E. Nichols, View ORCID ProfileBeatrijs Moerkerke
doi: https://doi.org/10.1101/865881
Han Bossier
1Ghent University, Henri-Dunantlaan, 2, 9000, Ghent, Belgium
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Han Bossier
  • For correspondence: Han.Bossier@Ugent.be
Thomas E. Nichols
2Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of PopulationHealth, University of Oxford, Oxford, OX3 7LF, United Kingdom
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Thomas E. Nichols
Beatrijs Moerkerke
1Ghent University, Henri-Dunantlaan, 2, 9000, Ghent, Belgium
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Beatrijs Moerkerke
  • Abstract
  • Full Text
  • Info/History
  • Metrics
  • Data/Code
  • Preview PDF
Loading

Abstract

Scientific progress is based on the ability to compare opposing theories and thereby develop consensus among existing hypotheses or create new ones. We argue that data aggregation (i.e. combine data across studies or research groups) for neuroscience is an important tool in this process. An important prerequisite is the ability to directly compare fMRI results over studies. In this paper, we discuss how an observed effect size in an fMRI data-analysis can be transformed into a standardized effect size. We demonstrate how these enable direct comparison and data aggregation over studies. Furthermore, we also discuss the influence of key parameters in the design of an fMRI experiment (such as number of scans and the sample size) on (statistical) properties of standardized effect sizes. In the second part of the paper, we give an overview of two approaches to aggregate fMRI results over studies. The first corresponds to extending the two-level general linear model approach as is typically used in individual fMRI studies with a third level. This requires the parameter estimates corresponding to the group models from each study together with estimated variances and meta-data. Unfortunately, there is a risk of running into unit mismatches when the primary studies use different scales to measure the BOLD response. To circumvent, it is possible to aggregate (unitless) standardized effect sizes which can be derived from summary statistics. We discuss a general model to aggregate these and different approaches to deal with between-study heterogeneity. Furthermore, we hope to further promote the usage of standardized effect sizes in fMRI research.

Footnotes

  • https://github.com/NeuroStat/ESfMRI

Copyright 
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC 4.0 International license.
Back to top
PreviousNext
Posted December 06, 2019.
Download PDF
Data/Code
Email

Thank you for your interest in spreading the word about bioRxiv.

NOTE: Your email address is requested solely to identify you as the sender of this article.

Enter multiple addresses on separate lines or separate them with commas.
Standardized Effect Sizes and Image-Based Meta-Analytical Approaches for fMRI Data
(Your Name) has forwarded a page to you from bioRxiv
(Your Name) thought you would like to see this page from the bioRxiv website.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Standardized Effect Sizes and Image-Based Meta-Analytical Approaches for fMRI Data
Han Bossier, Thomas E. Nichols, Beatrijs Moerkerke
bioRxiv 865881; doi: https://doi.org/10.1101/865881
Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
Citation Tools
Standardized Effect Sizes and Image-Based Meta-Analytical Approaches for fMRI Data
Han Bossier, Thomas E. Nichols, Beatrijs Moerkerke
bioRxiv 865881; doi: https://doi.org/10.1101/865881

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
  • Tweet Widget
  • Facebook Like
  • Google Plus One

Subject Area

  • Neuroscience
Subject Areas
All Articles
  • Animal Behavior and Cognition (2653)
  • Biochemistry (5285)
  • Bioengineering (3696)
  • Bioinformatics (15823)
  • Biophysics (7279)
  • Cancer Biology (5633)
  • Cell Biology (8117)
  • Clinical Trials (138)
  • Developmental Biology (4781)
  • Ecology (7546)
  • Epidemiology (2059)
  • Evolutionary Biology (10602)
  • Genetics (7746)
  • Genomics (10160)
  • Immunology (5222)
  • Microbiology (13959)
  • Molecular Biology (5399)
  • Neuroscience (30867)
  • Paleontology (217)
  • Pathology (883)
  • Pharmacology and Toxicology (1527)
  • Physiology (2262)
  • Plant Biology (5034)
  • Scientific Communication and Education (1044)
  • Synthetic Biology (1399)
  • Systems Biology (4155)
  • Zoology (814)