Iteration | F | P-value |
---|---|---|
1 | 16.531079 | 0.0001437 |
2 | 15.562883 | 0.0002147 |
3 | 14.748299 | 0.0003025 |
4 | 13.838332 | 0.0004461 |
5 | 15.147146 | 0.0002556 |
6 | 16.004948 | 0.0001786 |
7 | 14.092498 | 0.0004000 |
8 | 16.997272 | 0.0001187 |
9 | 15.335603 | 0.0002361 |
10 | 15.139527 | 0.0002564 |
11 | 15.645419 | 0.0002074 |
12 | 16.254525 | 0.0001611 |
13 | 15.185412 | 0.0002515 |
14 | 17.303102 | 0.0001048 |
15 | 13.937986 | 0.0004274 |
16 | 16.111767 | 0.0001709 |
17 | 16.807116 | 0.0001283 |
18 | 15.573240 | 0.0002138 |
19 | 16.014270 | 0.0001779 |
20 | 17.048467 | 0.0001163 |
21 | 17.276816 | 0.0001059 |
22 | 15.668776 | 0.0002054 |
23 | 16.223291 | 0.0001632 |
24 | 12.302702 | 0.0008719 |
25 | 13.703055 | 0.0004729 |
26 | 14.134728 | 0.0003928 |
27 | 14.772513 | 0.0002994 |
28 | 16.253850 | 0.0001611 |
29 | 13.587546 | 0.0004970 |
30 | 17.194803 | 0.0001095 |
31 | 16.281459 | 0.0001593 |
32 | 15.513094 | 0.0002192 |
33 | 15.287061 | 0.0002410 |
34 | 15.321769 | 0.0002375 |
35 | 14.689588 | 0.0003101 |
36 | 14.858098 | 0.0002887 |
37 | 13.874137 | 0.0004393 |
38 | 14.980963 | 0.0002741 |
39 | 15.915713 | 0.0001853 |
40 | 12.544188 | 0.0007837 |
41 | 16.474890 | 0.0001471 |
42 | 5.259116 | 0.0254122 |
43 | 14.992987 | 0.0002727 |
44 | 15.714802 | 0.0002015 |
45 | 14.474645 | 0.0003397 |
46 | 14.476655 | 0.0003394 |
47 | 14.196944 | 0.0003825 |
48 | 16.290060 | 0.0001587 |
49 | 15.254039 | 0.0002443 |
50 | 15.278815 | 0.0002418 |
51 | 15.289366 | 0.0002408 |
52 | 9.859949 | 0.0026388 |
53 | 16.698077 | 0.0001342 |
54 | 14.016884 | 0.0004131 |
55 | 12.280376 | 0.0008805 |
56 | 14.548613 | 0.0003292 |
57 | 7.152695 | 0.0096692 |
58 | 15.147798 | 0.0002555 |
59 | 10.377347 | 0.0020775 |
60 | 15.302921 | 0.0002394 |
61 | 15.228672 | 0.0002470 |
62 | 14.304429 | 0.0003653 |
63 | 16.932795 | 0.0001219 |
64 | 17.734685 | 0.0000880 |
65 | 14.813640 | 0.0002942 |
66 | 15.525521 | 0.0002181 |
67 | 12.511121 | 0.0007952 |
68 | 16.095013 | 0.0001720 |
69 | 12.980337 | 0.0006472 |
70 | 15.356625 | 0.0002341 |
71 | 15.644893 | 0.0002075 |
72 | 14.993354 | 0.0002727 |
73 | 15.820177 | 0.0001928 |
74 | 15.252317 | 0.0002445 |
75 | 15.949731 | 0.0001827 |
76 | 14.668289 | 0.0003129 |
77 | 15.272259 | 0.0002425 |
78 | 15.801764 | 0.0001943 |
79 | 16.009900 | 0.0001782 |
80 | 15.075731 | 0.0002634 |
81 | 16.660346 | 0.0001363 |
82 | 15.851094 | 0.0001904 |
83 | 16.651231 | 0.0001368 |
84 | 12.951702 | 0.0006553 |
85 | 14.938924 | 0.0002790 |
86 | 11.418765 | 0.0012936 |
87 | 14.708092 | 0.0003077 |
88 | 15.628676 | 0.0002089 |
89 | 17.328799 | 0.0001037 |
90 | 14.326590 | 0.0003619 |
91 | 15.233173 | 0.0002465 |
92 | 17.085456 | 0.0001145 |
93 | 16.380788 | 0.0001529 |
94 | 15.350804 | 0.0002346 |
95 | 16.729521 | 0.0001325 |
96 | 14.346575 | 0.0003588 |
97 | 15.025550 | 0.0002690 |
98 | 15.799853 | 0.0001945 |
99 | 17.951190 | 0.0000806 |
100 | 15.381855 | 0.0002316 |
Louse.taxa | Extract.Code | Host.species | Host.Collection.code | Collection.location | Collection.date | DNA.extraction.date | DNA.yield..ng.uL. | Sonication.instrument | Library.preparation.kit | Sequencing.platform | Sequencing.Kit | Sequencing.cycles | Bar.code | Sequencing.pool | Read.length | Paired.end | Number.of.raw.Reads | Predicted.sequencing.depth | Read.duplication | Number.of.reads.after.pre.processing | Sequencing.depth.after.pre.processing | Number.of.genes.assembled.with.BowTie2..1.058.Genes.Targeted. | NCBI.SRA | NCBI.BioSample | NCBI.BioProject | Chosen.for.Phylonet.analyses..1.means.yes. |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Physconelloides emersoni emersoni | Pheme.Memel.5.26.2015.8 | Metriopelia melanoptera | KGM445 | Argentina: Jujay | 11-Oct-2001 | 26-May-15 | 0.853 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ATTCCT | 4 | 160nt | yes | 118843526 | 95.07000 | 23.70 | 96244932 | 77.00000 | 1058 | SRP076185 | SAMN04633184 | PRJNA318056 | 1 |
Physconelloides emersoni emersoni | Pheme.Memel.6.15.2015.5 | Metriopelia melanoptera | KGM511 | Bolivia: Lago Poopo, Oruro | 2-Nov-2001 | 15-Jun-15 | 0.379 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CAGATC | 1 | 160nt | yes | 78198304 | 62.56000 | 37.67 | 50415214 | 40.33000 | 1052 | SRP076185 | SAMN04633188 | PRJNA318056 | 0 |
Physconelloides emersoni emersoni | Pheme.Memel.3.16.2016.2 | Metriopelia melanoptera | REW273 | Peru: Puno | 21-Oct-2002 | 16-Mar-16 | 0.417 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CGTCTCGTGA | 2 | 160nt | yes | 63517384 | 50.81000 | 17.90 | 51240446 | 40.99000 | 1057 | SRP076185 | SAMN05099560 | PRJNA318056 | 0 |
Physconelloides emersoni emersoni | Pheme.Memel.3.16.2016.8 | Metriopelia melanoptera | ASEC004 | Ecuador: Pichincha | 23-Jan-2016 | 16-Mar-16 | 0.333 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GAGAGTACTA | 3 | 160nt | yes | 36399076 | 29.12000 | 12.17 | 28968590 | 23.17000 | 1058 | SRP076185 | SAMN05099566 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Clpre.3.14.2016.5 | Claravis pretiosa | 5172 | Brazil: Para | 2-Jun-2013 | 14-Mar-16 | 0.579 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CCGGTGGAAT | 1 | 160nt | yes | 35524478 | 28.42000 | 26.60 | 27317070 | 21.85000 | 1050 | SRP076185 | SAMN05099551 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Clpre.3.14.2016.11 | Claravis pretiosa | GES470 | Mexico: Campeche | 16-Mar-1998 | 14-Mar-16 | 0.212 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TCTCGACGTT | 2 | 160nt | yes | 42423630 | 33.94000 | 27.43 | 33041298 | 26.43000 | 1058 | SRP076185 | SAMN05099557 | PRJNA318056 | 1 |
Physconelloides eurysema eurysema 3 | Pheur.Clpre.3.16.2016.5 | Claravis pretiosa | 6414 | Brazil: Para | 1-Aug-2014 | 16-Mar-16 | 0.090 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | AGGAGAATCA | 3 | 160nt | yes | 40120794 | 32.10000 | 14.05 | 31896742 | 25.52000 | 1058 | SRP076185 | SAMN05099563 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Clpre.5.26.2015.6 | Claravis pretiosa | GES382 | Mexico: Campeche | 16-Mar-1998 | 26-May-15 | 0.973 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GAGTGG | 4 | 160nt | yes | 63821562 | 51.06000 | 20.82 | 49744786 | 39.80000 | 1058 | SRP076185 | SAMN04633182 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Clpre.6.15.2015.8 | Claravis pretiosa | REW176 | Peru: Cajamarca | 7-Sep-2002 | 15-Jun-15 | 0.189 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TTAGGC | 1 | 160nt | yes | 51392388 | 41.11000 | 17.67 | 37130950 | 29.70000 | 1058 | SRP076185 | SAMN04633191 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cobuc.3.16.2016.4 | Columbina buckleyi | RCF998 | Peru: Cajamarca | 15-Feb-1999 | 16-Mar-16 | 0.522 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ACTTCCGCAC | 3 | 160nt | yes | 36856494 | 29.49000 | 10.56 | 33206986 | 26.57000 | 1058 | SRP076185 | SAMN05099562 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cobuc.6.15.2015.1 | Columbina buckleyi | REW170 | Peru: Cajamarca | 5-Sep-2002 | 15-Jun-15 | 0.515 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CGATGT | 1 | 160nt | yes | 61157596 | 48.93000 | 51.75 | 36504910 | 29.20000 | 1058 | SRP076185 | SAMN04633185 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cocru.3.16.2016.9 | Columbina cruziana | ASEC008 | Ecuador: Manabi | 29-Jan-2016 | 16-Mar-16 | 0.481 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GCTCCTCTTG | 3 | 160nt | yes | 44058524 | 35.25000 | 7.95 | 35529848 | 28.42000 | 1057 | SRP076185 | SAMN05099567 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cocru.6.15.2015.2 | Columbina cruziana | REW85 | Peru: Lima | 8-Aug-2002 | 15-Jun-15 | 0.887 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TGACCA | 1 | 160nt | yes | 61326000 | 49.06000 | 71.40 | 26000756 | 20.80000 | 1046 | SRP076185 | SAMN04633186 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Comin.3.14.2016.9 | Columbina minuta | JK06-367 | Panama: Charco Azul | 2-Mar-2006 | 14-Mar-16 | 0.499 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TGTTACCTAC | 2 | 160nt | yes | 32144260 | 25.72000 | 25.74 | 24668212 | 19.73000 | 1058 | SRP076185 | SAMN05099555 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Copas.3.14.2016.4 | Columbina passerina | 5048 | Brazil: Amazonas | 11-Jul-2013 | 14-Mar-16 | 0.520 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ACCGCCTATT | 1 | 160nt | yes | 41362350 | 33.09000 | 13.07 | 33206986 | 26.57000 | 1056 | SRP076185 | SAMN05099550 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Copas.3.14.2016.7 | Columbina passerina | 5050 | Brazil: Amazonas | 11-Jul-2013 | 14-Mar-16 | 0.294 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GCAGGCGTAT | 1 | 160nt | yes | 48354288 | 38.68000 | 17.09 | 38250780 | 30.60000 | 1050 | SRP076185 | SAMN05099553 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Copas.3.14.2016.10 | Columbina passerina | GES233 | Mexico: Campeche | 2-Mar-1998 | 14-Mar-16 | 0.323 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TAGCGGCACT | 2 | 160nt | yes | 46626818 | 37.30000 | 30.13 | 35850772 | 28.68000 | 1058 | SRP076185 | SAMN05099556 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Copas.3.16.2016.1 | Columbina passerina | 6469 | Brazil: Rondonia | 7-Oct-2014 | 16-Mar-16 | 0.610 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TAAGAGCGCC | 2 | 160nt | yes | 49146294 | 39.32000 | 10.47 | 39663616 | 31.73000 | 1058 | SRP076185 | SAMN05099559 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Copas.3.16.2016.7 | Columbina passerina | ASEC001 | Ecuador: Pichincha, Calacali | 20-Jan-2016 | 16-Mar-16 | 0.387 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CTACAACGGC | 3 | 160nt | yes | 35742462 | 28.59000 | 10.13 | 28679204 | 22.94000 | 1058 | SRP076185 | SAMN05099565 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cotal.3.14.2016.2 | Columbina talpacoti | 4741 | Brazil: Santa Catarina | 31-Oct-2013 | 14-Mar-16 | 0.197 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TTGTTGGCGG | 1 | 160nt | yes | 24481602 | 19.59000 | 38.76 | 17876904 | 14.30000 | 1048 | SRP076185 | SAMN05099548 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cotal.3.14.2016.6 | Columbina talpacoti | GMS1950 | Panama: Torti | 18-Feb-2006 | 14-Mar-16 | 0.731 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CTAACGATCG | 1 | 160nt | yes | 49810804 | 39.85000 | 12.18 | 40316768 | 32.25000 | 1058 | SRP076185 | SAMN05099552 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cotal.3.16.2016.3 | Columbina talpacoti | 6370 | Brazil: Sao Paulo | 1-Jun-2014 | 16-Mar-16 | 0.231 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TTCTCCTTCA | 2 | 160nt | yes | 51734340 | 41.39000 | 14.29 | 41941080 | 33.55000 | 1050 | SRP076185 | SAMN05099561 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 3 | Pheur.Cotal.3.16.2016.12 | Columbina talpacoti | SMD739 | Panama: Felipillo | 19-Feb-2006 | 16-Mar-16 | 0.207 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ACATGGTCCA | 3 | 160nt | yes | 34980054 | 27.98000 | 11.28 | 27853084 | 22.28000 | 1057 | SRP076185 | SAMN05099570 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 4 | Pheur.Coinc.6.15.2015.7 | Columbina inca | MCZ 01-149 | Costa Rica: Guanacaste | 10-Dec-2001 | 15-Jun-15 | 0.887 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ATCACG | 1 | 160nt | yes | 53047444 | 42.44000 | 22.31 | 34924128 | 27.94000 | 1052 | SRP076185 | SAMN04633190 | PRJNA318056 | 1 |
Physconelloides eurysema eurysema 1 | Pheur.Comin.6.15.2015.10 | Columbina minuta | MCZ 01-335 | Costa Rica: Guanacaste | 10-Dec-2001 | 15-Jun-15 | 0.363 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GATCAG | 1 | 160nt | yes | 46622380 | 37.30000 | 12.96 | 31194444 | 24.96000 | 1052 | SRP076185 | SAMN04633192 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 1 | Pheur.Copas.3.14.2016.8 | Columbina passerina | 299 | USA: Texas (captive) | 27-Apr-2000 | 14-Mar-16 | 0.967 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GCCTTCAGGA | 2 | 160nt | yes | 44144898 | 35.32000 | 8.11 | 35767700 | 28.61000 | 1058 | SRP076185 | SAMN05099554 | PRJNA318056 | 1 |
Physconelloides eurysema eurysema 1 | Pheur.Copas.3.16.2016.6 | Columbina passerina |
|
USA: Illinois, McClean, Bloomington | 19-Oct-2015 | 16-Mar-16 | 0.105 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | AGCTCAACGA | 3 | 160nt | yes | 40646734 | 32.52000 | 19.80 | 31553360 | 25.24000 | 1050 | SRP076185 | SAMN05099564 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 2 | Pheur.Cosqu.3.14.2016.1 | Columbina squammata | 4702 | Brazil: Para | 1-Sep-2010 | 14-Mar-16 | 0.464 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | AGTATAGCGC | 1 | 160nt | yes | 33666308 | 26.93000 | 23.60 | 25793048 | 20.63000 | 1058 | SRP076185 | SAMN05099547 | PRJNA318056 | 1 |
Physconelloides eurysema eurysema 2 | Pheur.Cosqu.3.14.2016.12 | Columbina squammata | 4780 | Brazil: Para | 15-Aug-2013 | 14-Mar-16 | 0.162 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | GGCGAAGGTT | 2 | 160nt | yes | 49091816 | 39.27000 | 41.21 | 35989584 | 28.79000 | 1054 | SRP076185 | SAMN05099558 | PRJNA318056 | 0 |
Physconelloides eurysema eurysema 5 | Pheur.Urcam.3.14.2016.3 | Uropelia campestris | 4887 | Brazil: Para | 20-Aug-2013 | 14-Mar-16 | 2.500 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | AACCGAGTTA | 1 | 160nt | yes | 43813494 | 35.05000 | 16.04 | 34834472 | 27.87000 | 1058 | SRP076185 | SAMN05099549 | PRJNA318056 | 1 |
Physconelloides robbinsi robbinsi | Phrob.Mecec.5.26.2015.7 | Metriopelia ceciliae | REW153 | Peru: Caras | 28-Aug-2002 | 26-May-15 | 1.280 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | ACTGAT | 4 | 160nt | yes | 80808714 | 64.65000 | 17.87 | 63931800 | 51.15000 | 1058 | SRP076185 | SAMN04633183 | PRJNA318056 | 1 |
Physconelloides robbinsi robbinsi | Phrob.Mecec.6.15.2015.6 | Metriopelia ceciliae | REW151 | Peru: Caras | 28-Aug-2002 | 15-Jun-15 | 0.940 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CTTGTA | 1 | 160nt | yes | 13580582 | 10.86000 | 39.22 | 7260590 | 5.81000 | 1032 | SRP076185 | SAMN04633189 | PRJNA318056 | 0 |
Physconelloides robbinsi robbinsi | Phrob.Mecec.3.16.2016.10 | Metriopelia ceciliae | REW150 | Peru: Caras | 28-Aug-2002 | 16-Mar-16 | 0.167 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | TAGGCATCGG | 3 | 160nt | yes | 34801206 | 27.84000 | 19.67 | 27053634 | 21.64000 | 1058 | SRP076185 | SAMN05099568 | PRJNA318056 | 0 |
Physconelloides robbinsi robbinsi | Phrob.Mecec.3.16.2016.11 | Metriopelia ceciliae | REW294 | Peru: Tacna | 25-Oct-2002 | 16-Mar-16 | 0.257 | Covaris M220 | Kapa Biosystems | Illumina HiSeq2500 | HiSeq SBS V. 4 | 161 | CAACCTAACA | 3 | 160nt | yes | 33983950 | 27.19000 | 14.41 | 26808390 | 21.45000 | 1058 | SRP076185 | SAMN05099569 | PRJNA318056 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Coinc.11.2.2016.9 | Columbina inca | MCZ 01-149 | Costa Rica | 10-Dec-2001 | 2-Nov-2016 | 0.324 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TCCTTAACCCGG | 2 | 150 bp | yes | 45454206 | 34.09065 | 15.47 | 34876801 | 26.15760 | 1031 | SRR5998819 | SAMN07573751 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Comin.11.2.2016.16 | Columbina minuta | JMD733 | Panama: Felipillo | 19-Feb-2006 | 2-Nov-2016 | 0.501 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GAAAGAGAGTCC | 1 | 150 bp | yes | 47902092 | 35.92657 | 31.25 | 34645037 | 25.98378 | 1037 | SRR5998828 | SAMN07573758 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Comin.11.2.2016.4 | Columbina minuta | JLK258 | Peru: Loreto | 15-Jun-2001 | 2-Nov-2016 | 0.231 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TGATGCAACCGG | 1 | 150 bp | yes | 31447878 | 23.58591 | 15.03 | 23729175 | 17.79688 | 1037 | SRR5998812 | SAMN07573746 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copas.11.7.2016.12 | Columbina passerina | GES233 | Mexico: Yucatan | 2-Mar-1998 | 7-Nov-2016 | 0.268 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GGGCCAACCCTT | 1 | 150 bp | yes | 37641540 | 28.23116 | 34.47 | 26218767 | 19.66408 | 1037 | SRR5998808 | SAMN07573769 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copas.11.7.2016.14 | Columbina passerina | ASEC001 | Ecuador: Pichincha: Calicali | 20-Jan-2016 | 7-Nov-2016 | 0.343 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CCCGGAACCCTT | 1 | 150 bp | yes | 45388822 | 34.04162 | 28.00 | 32058302 | 24.04373 | 1036 | SRR5998802 | SAMN07573771 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copas.11.7.2016.15 | Columbina passerina | n/a | USA: IL: McClean: Bloomington | 19-Oct-2015 | 7-Nov-2016 | 0.402 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CTTCCAACCCGG | 2 | 150 bp | yes | 42180932 | 31.63570 | 17.18 | 32311708 | 24.23378 | 1037 | SRR5998801 | SAMN07573772 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copas.11.7.2016.8 | Columbina passerina | 5049 | Brazil: Amazonas | 11-Jul-2013 | 7-Nov-2016 | 0.475 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GTACTGATCCTT | 1 | 150 bp | yes | 39632690 | 29.72452 | 16.79 | 29508201 | 22.13115 | 1037 | SRR5998804 | SAMN07573765 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copic.11.2.2016.1 | Columbina picui | CCW880 | Bolivia: Santa Cruz | n/a | 2-Nov-2016 | 0.219 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | AACGTTGTGTCC | 1 | 150 bp | yes | 32596536 | 24.44740 | 17.31 | 24402171 | 18.30163 | 1031 | SRR5998813 | SAMN07573743 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Copic.11.2.2016.3 | Columbina picui | KGM292 | Argentina: Cordoba | 26-Apr-2001 | 2-Nov-2016 | 0.260 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GCGGAGATCCGG | 2 | 150 bp | yes | 47314896 | 35.48617 | 12.25 | 35586948 | 26.69021 | 1036 | SRR5998811 | SAMN07573745 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Cosqu.11.7.2016.1 | Columbina squammata | 4703 | Brazil: Para | 1-Sep-2010 | 7-Nov-2016 | 0.521 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | ATTCTGAAGTCC | 2 | 150 bp | yes | 48517638 | 36.38823 | 15.39 | 36766169 | 27.57463 | 1037 | SRR5998825 | SAMN07573759 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Cosqu.11.7.2016.5 | Columbina squammata | 4781 | Brazil: Para | 15-Aug-2013 | 7-Nov-2016 | 0.156 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | AACATTAGCCGG | 1 | 150 bp | yes | 72675376 | 54.50653 | 14.09 | 52631931 | 39.47395 | 1033 | SRR5998806 | SAMN07573763 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Cotal.11.2.2016.15 | Columbina talpacoti | GMS1870 | Panama: Torti | 13-Feb-2006 | 2-Nov-2016 | 0.502 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GGCGGTTGGGCC | 2 | 150 bp | yes | 46266960 | 34.70022 | 14.42 | 35674625 | 26.75597 | 1037 | SRR5998827 | SAMN07573757 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Cotal.11.7.2016.2 | Columbina talpacoti | JMD732 | Panama: Felipillo | 19-Feb-2006 | 7-Nov-2016 | 0.601 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GTCGTCAACCGG | 1 | 150 bp | yes | 35243764 | 26.43282 | 15.97 | 26727002 | 20.04525 | 1037 | SRR5998826 | SAMN07573760 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Urcam.11.7.2016.4 | Uropelia campestris | 4789 | Brazil: Para | 15-Aug-2013 | 7-Nov-2016 | 0.104 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GACCGTAGCCTT | 1 | 150 bp | yes | 74749204 | 56.06190 | 17.66 | 52886962 | 39.66522 | 1036 | SRR5998830 | SAMN07573762 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Cosp.Urcam.11.7.2016.6 | Uropelia campestris | 4888 | Brazil: Para | 20-Aug-2013 | 7-Nov-2016 | 0.335 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CGTCAGTTGTCC | 2 | 150 bp | yes | 49864818 | 37.39861 | 17.87 | 39286712 | 29.46503 | 1037 | SRR5998805 | SAMN07573764 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 1 | Copas1 | Columbina picui | Argentina: Salta | NA | NA | NA | NA | NA | NA | NA | NA | 1037 | SRR3161931 | SAMN04103775 | PRJNA296666 | 1 | ||||||||||
Columbicola passerinae passerinae 2 | Cosp.Clpre.11.2.2016.14 | Claravis pretiosa | REW178 | Peru: Cajamarca | 7-Sep-2002 | 2-Nov-2016 | 0.304 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CATGGCCGGTCC | 2 | 150 bp | yes | 41944386 | 31.45829 | 16.97 | 31984684 | 23.98851 | 1036 | SRR5998822 | SAMN07573756 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Clpre.11.7.2016.11 | Claravis pretiosa | CO-14 | Mexico: Campeche | 19-Mar-1998 | 7-Nov-2016 | 0.514 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CTGGCTAGCCTT | 1 | 150 bp | yes | 45739438 | 34.30458 | 21.00 | 33977515 | 25.48314 | 1037 | SRR5998809 | SAMN07573768 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Clpre.11.7.2016.3 | Claravis pretiosa | REW166 | Peru: Cajamarca: Jaen | 5-Sep-2002 | 7-Nov-2016 | 0.443 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TTGCATGTGGCC | 1 | 150 bp | yes | 40306124 | 30.22959 | 20.84 | 30250586 | 22.68794 | 1037 | SRR5998829 | SAMN07573761 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Clpre.11.7.2016.9 | Claravis pretiosa | 5178 | Brazil: Para | 7-Jun-2013 | 7-Nov-2016 | 0.334 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GTCACGTACCTT | 1 | 150 bp | yes | 42960738 | 32.22055 | 44.09 | 27071367 | 20.30353 | 1037 | SRR5998803 | SAMN07573766 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cobuc.11.2.2016.13 | Columbina buckleyi | REW187 | Peru: Cajamarca | 7-Sep-2002 | 2-Nov-2016 | 0.638 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CCTGTTGACCGG | 2 | 150 bp | yes | 36749634 | 27.56223 | 17.85 | 28306675 | 21.23001 | 1034 | SRR5998821 | SAMN07573755 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cobuc.11.2.2016.2 | Columbina buckleyi | RCF998 | Peru | n/a | 2-Nov-2016 | 0.403 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GCAGTGTTGGCC | 1 | 150 bp | yes | 32833854 | 24.62539 | 25.53 | 24018454 | 18.01384 | 1037 | SRR5998814 | SAMN07573744 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cocru.11.2.2016.11 | Columbina cruziana | REW84 | Peru: Lima: Hatillo | 8-Aug-2002 | 2-Nov-2016 | 0.386 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CAGTACGCGGCC | 1 | 150 bp | yes | 42659324 | 31.99449 | 41.41 | 28547754 | 21.41082 | 1037 | SRR5998823 | SAMN07573753 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cocru.11.7.2016.16 | Columbina cruziana | ASEC006 | Ecuador: Manabi: Cerro Seco | 29-Jan-2016 | 7-Nov-2016 | 0.353 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GAAGGAACCCGG | 2 | 150 bp | yes | 49782620 | 37.33696 | 15.47 | 38438694 | 28.82902 | 1036 | SRR5998831 | SAMN07573773 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cotal.11.2.2016.8 | Columbina talpacoti | n/a | Bolivia | 5-May-2002 | 2-Nov-2016 | 0.482 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | AAATTAACCCTT | 2 | 150 bp | yes | 48092106 | 36.06908 | 15.46 | 36474253 | 27.35569 | 1037 | SRR5998816 | SAMN07573750 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Cosp.Cotal.11.7.2016.10 | Columbina talpacoti | 6471 | Brazil: Rondonia | 7-Oct-2014 | 7-Nov-2016 | 0.304 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | ACTACCAACCGG | 2 | 150 bp | yes | 45408470 | 34.05635 | 13.86 | 34842969 | 26.13223 | 1037 | SRR5998810 | SAMN07573767 | PRJNA400795 | 0 |
Columbicola passerinae passerinae 2 | Copas2 | Columbina cruziana | Peru | NA | NA | NA | NA | NA | NA | NA | NA | 1037 | SRR3161930 | SAMN04103774 | PRJNA296666 | 1 | ||||||||||
Columbicola drowni drowni | Cosp.Memel.11.2.2016.6 | Metriopelia melanoptera | KGM 443 | Argentina: Jujuy | 10-Oct-2001 | 2-Nov-2016 | 0.501 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TACCGGCGCCGG | 2 | 150 bp | yes | 46552564 | 34.91442 | 12.95 | 35613935 | 26.71045 | 1039 | SRR5998818 | SAMN07573748 | PRJNA400795 | 0 |
Columbicola drowni drowni | Cosp.Memel.11.7.2016.13 | Metriopelia melanoptera | ASEC003 | Ecuador: Pichincha: Secas | 23-Jan-2016 | 7-Nov-2016 | 0.570 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TACTACGGCCTT | 2 | 150 bp | yes | 54926416 | 41.19481 | 19.90 | 41232463 | 30.92435 | 1039 | SRR5998807 | SAMN07573770 | PRJNA400795 | 0 |
Columbicola drowni drowni | Codro | Metriopelia melanoptera | Argentina: Jujuy | NA | NA | NA | NA | NA | NA | NA | NA | 1039 | SRR3161922 | SAMN04103766 | PRJNA296666 | 1 | ||||||||||
Columbicola gymnopeliae gymnopeliae | Cosp.Mecec.11.2.2016.10 | Metriopelia ceciliae | REW192 | Peru: Cajamarca | 13-Sep-2002 | 2-Nov-2016 | 0.494 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | GCTCGGCCGGCC | 1 | 150 bp | yes | 44362564 | 33.27192 | 16.95 | 33757698 | 25.31827 | 1038 | SRR5998820 | SAMN07573752 | PRJNA400795 | 1 |
Columbicola gymnopeliae gymnopeliae | Cosp.Mecec.11.2.2016.12 | Metriopelia ceciliae | REW150 | Peru: Caras | 28-Aug-2002 | 2-Nov-2016 | 0.561 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | CATAGCTTCCGG | 2 | 150 bp | yes | 39654522 | 29.74089 | 12.77 | 30602281 | 22.95171 | 1037 | SRR5998824 | SAMN07573754 | PRJNA400795 | 0 |
Columbicola gymnopeliae gymnopeliae | Cogym | Metriopelia ceciliae | Peru: Cajamarca | NA | NA | NA | NA | NA | NA | NA | NA | 1037 | SRR3161923 | SAMN04103767 | PRJNA296666 | 0 | ||||||||||
Columbicola altamimiae altamimiae | Cosp.Meaym.11.2.2016.5 | Metriopelia aymara | KGM 431 | Argentina: Salta | 6-Oct-2001 | 2-Nov-2016 | 0.606 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | TTACTTCTCCGG | 1 | 150 bp | yes | 35598232 | 26.69867 | 13.33 | 26911929 | 20.18395 | 1031 | SRR5998817 | SAMN07573747 | PRJNA400795 | 1 |
Columbicola altamimiae altamimiae | Cosp.Meaym.11.2.2016.7 | Metriopelia aymara | KGM 510 | Bolivia: Oruro: Lago Poopo | 2-Nov-2001 | 2-Nov-2016 | 0.168 | Covaris M220 | Hyper Library (Kapa Biosystems) | Illumina HiSeq4000 | HiSeq4000 v.1 | 151 | ATGATCGGCCTT | 2 | 150 bp | yes | 46193236 | 34.64493 | 15.82 | 34544913 | 25.90868 | 1031 | SRR5998815 | SAMN07573749 | PRJNA400795 | 0 |
Columbicola altamimiae altamimiae | Coalt | Metriopelia aymara | Argentina: Salta | NA | NA | NA | NA | NA | NA | NA | NA | 1031 | SRR3161921 | SAMN04103765 | PRJNA296666 | 0 |
Individuals used for the phylonet analyses are asterisked.
Fig. S1. sppIDer results of Columbicola altamimiae samples
Fig. S2. sppIDer results of Columbicola drowni_drowni samples Fig. S3. sppIDer results of Columbicola gymnopeliae samplesFig. S4. sppIDer results of Columbicola passerinae 1 samples
Fig. S5. sppIDer results of Columbicola passerinae 2 samplesFig. S6. sppIDer results of Physconelloides eurysema 1 samples
Fig. S7. sppIDer results of Physconelloides eurysema 2 samples Fig. S8. sppIDer results of Physconelloides eurysema 3 samples Fig. S9. sppIDer results of Physconelloides eurysema 4 samples Fig. S10. sppIDer results of Physconelloides eurysema 5 samples Fig. S11. sppIDer results of Physconelloides robbinsi samples Fig. S12. sppIDer results of Physconelloides emersoni samples