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Light-induced indeterminacy alters shade avoiding tomato leaf morphology

View ORCID ProfileDaniel H. Chitwood, Ravi Kumar, Aashish Ranjan, Julie Pelletier, Brad Townsley, Yasunori Ichihashi, Ciera Martinez, Kristina Zumstein, John Harada, Julin Maloof, Neelima Sinha
doi: https://doi.org/10.1101/024018
Daniel H. Chitwood
Donald Danforth Plant Science Center;
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  • ORCID record for Daniel H. Chitwood
Ravi Kumar
University of California at Davis
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Aashish Ranjan
University of California at Davis
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Julie Pelletier
University of California at Davis
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Brad Townsley
University of California at Davis
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Yasunori Ichihashi
University of California at Davis
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Ciera Martinez
University of California at Davis
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Kristina Zumstein
University of California at Davis
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John Harada
University of California at Davis
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Julin Maloof
University of California at Davis
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Neelima Sinha
University of California at Davis
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  • For correspondence: nrsinha@ucdavis.edu
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Abstract

Plants sense foliar shade of competitors and alter their developmental programs through the shade avoidance response. Internode and petiole elongation, and changes in overall leaf area and leaf mass per area, are the stereotypical architectural responses to foliar shade in the shoot. However, changes in leaf shape and complexity in response to shade remain incompletely, and qualitatively, described. Using a meta-analysis of >18,000 previously published leaflet outlines, we demonstrate that shade avoidance alters leaf shape in domesticated tomato and wild relatives. The effects of shade avoidance on leaf shape are subtle with respect to individual traits, but are combinatorially strong. We then seek to describe the developmental origins of shade-induced changes in leaf shape by swapping plants between light treatments. Leaf size is light-responsive late into development, but patterning events, such as stomatal index, are irrevocably specified earlier. Observing that shade induces increases in shoot apical meristem size, we then describe gene expression changes in early leaf primordia and the meristem using laser microdissection. We find that in leaf primordia shade avoidance is not mediated through canonical pathways described in mature organs, but rather the expression of KNOX and other indeterminacy genes, altering known developmental pathways responsible for patterning leaf shape. We also demonstrate that shade-induced changes in leaf primordium gene expression largely do not overlap with those found in successively initiated leaf primordia, providing evidence against classic hypotheses that shaded leaf morphology results from prolonged production of juvenile leaf types.

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The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted August 5, 2015.

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Light-induced indeterminacy alters shade avoiding tomato leaf morphology
Daniel H. Chitwood, Ravi Kumar, Aashish Ranjan, Julie Pelletier, Brad Townsley, Yasunori Ichihashi, Ciera Martinez, Kristina Zumstein, John Harada, Julin Maloof, Neelima Sinha
bioRxiv 024018; doi: https://doi.org/10.1101/024018
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Light-induced indeterminacy alters shade avoiding tomato leaf morphology
Daniel H. Chitwood, Ravi Kumar, Aashish Ranjan, Julie Pelletier, Brad Townsley, Yasunori Ichihashi, Ciera Martinez, Kristina Zumstein, John Harada, Julin Maloof, Neelima Sinha
bioRxiv 024018; doi: https://doi.org/10.1101/024018

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