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Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
View ORCID ProfileBen C. Collins, Christie L. Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger, Samuel L. Bader, Daniel W. Chan, Bradford W. Gibson, Anne-Claude Gingras, Jason M. Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P. Molloy, Robert L. Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N. Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
doi: https://doi.org/10.1101/074567
Ben C. Collins
1 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
Christie L. Hunter
2 SCIEX, 1201 Radio Road, Redwood City, California 94065, USA.
Yansheng Liu
1 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
Birgit Schilling
3 Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, California 94945, USA.
George Rosenberger
1 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
4 PhD Program in Systems Biology, University of Zurich and ETH Zurich, Zurich, Switzerland.
Samuel L. Bader
5 Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA.
Daniel W. Chan
6 Clinical Chemistry Division, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21231 USA.
Bradford W. Gibson
3 Buck Institute for Research on Aging, 8001 Redwood Boulevard, Novato, California 94945, USA.
7 Department of Pharmaceutical Chemistry, University of California, San Francisco, California 94143, USA.
Anne-Claude Gingras
8 Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.
9 Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada.
Jason M. Held
10 Departments of Medicine and Anesthesiology, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, Missouri 63110, USA.
Mio Hirayama-Kurogi
11 Department of Pharmaceutical Microbiology, Faculty of Life Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan.
Guixue Hou
12 Proteomics Division, BGI-Shenzhen, Shenzhen, China.
Christoph Krisp
13 Australian Proteome Analysis Facility (APAF), Department of Chemistry and Biomolecular Sciences, Macquarie University, 2109, Sydney, Australia.
Brett Larsen
8 Lunenfeld-Tanenbaum Research Institute, Sinai Health System, Toronto, Ontario, Canada.
Liang Lin
12 Proteomics Division, BGI-Shenzhen, Shenzhen, China.
Siqi Liu
12 Proteomics Division, BGI-Shenzhen, Shenzhen, China.
Mark P. Molloy
13 Australian Proteome Analysis Facility (APAF), Department of Chemistry and Biomolecular Sciences, Macquarie University, 2109, Sydney, Australia.
Robert L. Moritz
5 Institute for Systems Biology, 401 Terry Avenue North, Seattle, WA 98109, USA.
Sumio Ohtsuki
11 Department of Pharmaceutical Microbiology, Faculty of Life Sciences, Kumamoto University, 5-1 Oe-honmachi, Chuo-ku, Kumamoto 862-0973, Japan.
Ralph Schlapbach
14 Functional Genomics Center Zurich, ETH Zurich/University of Zurich, Winterthurerstr. 190, 8057, Zurich, Switzerland.
Nathalie Selevsek
14 Functional Genomics Center Zurich, ETH Zurich/University of Zurich, Winterthurerstr. 190, 8057, Zurich, Switzerland.
Stefani N. Thomas
6 Clinical Chemistry Division, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21231 USA.
Shin-Cheng Tzeng
10 Departments of Medicine and Anesthesiology, Washington University School of Medicine, 660 South Euclid Avenue, St. Louis, Missouri 63110, USA.
Hui Zhang
6 Clinical Chemistry Division, Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, 21231 USA.
Ruedi Aebersold
1 Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland.
15 Faculty of Science, University of Zurich, Zurich, Switzerland.
Article usage
Posted September 14, 2016.
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Ben C. Collins, Christie L. Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger, Samuel L. Bader, Daniel W. Chan, Bradford W. Gibson, Anne-Claude Gingras, Jason M. Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P. Molloy, Robert L. Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N. Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
bioRxiv 074567; doi: https://doi.org/10.1101/074567
Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry
Ben C. Collins, Christie L. Hunter, Yansheng Liu, Birgit Schilling, George Rosenberger, Samuel L. Bader, Daniel W. Chan, Bradford W. Gibson, Anne-Claude Gingras, Jason M. Held, Mio Hirayama-Kurogi, Guixue Hou, Christoph Krisp, Brett Larsen, Liang Lin, Siqi Liu, Mark P. Molloy, Robert L. Moritz, Sumio Ohtsuki, Ralph Schlapbach, Nathalie Selevsek, Stefani N. Thomas, Shin-Cheng Tzeng, Hui Zhang, Ruedi Aebersold
bioRxiv 074567; doi: https://doi.org/10.1101/074567
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