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Multiple introductions of Zika virus into the United States revealed through genomic epidemiology
View ORCID ProfileNathan D Grubaugh, Jason T Ladner, Moritz UG Kraemer, Gytis Dudas, Amanda L Tan, Karthik Gangavarapu, Michael R Wiley, Stephen White, Julien Thézé, Diogo M Magnani, Karla Prieto, Daniel Reyes, Andrea Bingham, Lauren M Paul, Refugio Robles-Sikisaka, Glenn Oliveira, Darryl Pronty, Hayden C Metsky, Mary Lynn Baniecki, Kayla G Barnes, Bridget Chak, Catherine A Freije, Adrianne Gladden-Young, Andreas Gnirke, Cynthia Luo, Bronwyn MacInnis, Christian B Matranga, Daniel J Park, James Qu, Stephen F Schaffner, Christopher Tomkins-Tinch, Kendra L West, Sarah M Winnicki, Shirlee Wohl, Nathan L Yozwiak, Joshua Quick, Joseph R Fauver, Kamran Khan, Shannon E Brent, Robert C Reiner Jr., Paola N Lichtenberger, Michael Ricciardi, Varian K Bailey, David I Watkins, Marshall R Cone, Edgar W Kopp IV, Kelly N Hogan, Andrew C Cannons, Reynald Jean, Robert F Garry, Nicholas J Loman, Nuno R Faria, Mario C Porcelli, Chalmers Vasquez, Elyse R Nagle, Derek AT Cummings, Danielle Stanek, Andrew Rambaut, Mariano Sanchez-Lockhart, Pardis C Sabeti, Leah D Gillis, Scott F Michael, Trevor Bedford, Oliver G Pybus, Sharon Isern, Gustavo Palacios, View ORCID ProfileKristian G Andersen
doi: https://doi.org/10.1101/104794
Nathan D Grubaugh
1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA
Jason T Ladner
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Moritz UG Kraemer
3Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
Gytis Dudas
44Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Amanda L Tan
5Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965,USA
Karthik Gangavarapu
1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA
Michael R Wiley
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Stephen White
6Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Miami, FL, 33125,USA
Julien Thézé
3Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
Diogo M Magnani
7Department of Pathology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA
Karla Prieto
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Daniel Reyes
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Andrea Bingham
8Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, 32399, USA
Lauren M Paul
5Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965,USA
Refugio Robles-Sikisaka
1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA
Glenn Oliveira
9Scripps Translational Science Institute, La Jolla, CA 92037, USA
Darryl Pronty
6Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Miami, FL, 33125,USA
Hayden C Metsky
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Mary Lynn Baniecki
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Kayla G Barnes
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Bridget Chak
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Catherine A Freije
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Adrianne Gladden-Young
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Andreas Gnirke
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Cynthia Luo
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Bronwyn MacInnis
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Christian B Matranga
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Daniel J Park
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
James Qu
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Stephen F Schaffner
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Christopher Tomkins-Tinch
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Kendra L West
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Sarah M Winnicki
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Shirlee Wohl
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Nathan L Yozwiak
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Joshua Quick
11Institute of Microbiology and Infection, University of Birmingham, Birmingham B15 2TT, UK
Joseph R Fauver
12Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA
Kamran Khan
13Li Ka Shing Knowledge Institute, St Michael´s Hospital, Toronto, ON M5B 1T8, Canada
14Division of Infectious Diseases, Department of Medicine, University of Toronto, Toronto, ON M5B 1T8, Canada
Shannon E Brent
13Li Ka Shing Knowledge Institute, St Michael´s Hospital, Toronto, ON M5B 1T8, Canada
Robert C Reiner Jr.
15Institute for Health Metrics and Evaluation, University of Washington, Seattle, WA 98121, USA
Paola N Lichtenberger
16Division of Infectious Diseases, University of Miami Miller School of Medicine, Miami, FL, 33155, USA
Michael Ricciardi
7Department of Pathology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA
Varian K Bailey
7Department of Pathology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA
David I Watkins
7Department of Pathology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA
Marshall R Cone
17Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, 33612, USA
Edgar W Kopp IV
17Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, 33612, USA
Kelly N Hogan
17Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, 33612, USA
Andrew C Cannons
17Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, 33612, USA
Reynald Jean
18Florida Department of Health in Miami-Dade County, Miami, FL, 33125, USA
Robert F Garry
19Department of Microbiology and Immunology, Tulane University School of Medicine, New Orleans, LA 70112, USA
Nicholas J Loman
11Institute of Microbiology and Infection, University of Birmingham, Birmingham B15 2TT, UK
Nuno R Faria
3Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
Mario C Porcelli
20Miami-Dade County Mosquito Control, Miami, FL, 33178 USA
Chalmers Vasquez
20Miami-Dade County Mosquito Control, Miami, FL, 33178 USA
Elyse R Nagle
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Derek AT Cummings
21Department of Biology and Emerging Pathogens Institute, University of Florida, Gainesville, FL, 32610, USA
Danielle Stanek
8Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, 32399, USA
Andrew Rambaut
22Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK
23Fogarty International Center, National Institutes of Health, Bethesda, MD 20892, USA
Mariano Sanchez-Lockhart
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Pardis C Sabeti
10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
Leah D Gillis
6Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Miami, FL, 33125,USA
Scott F Michael
5Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965,USA
Trevor Bedford
44Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Oliver G Pybus
3Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
Sharon Isern
5Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965,USA
Gustavo Palacios
2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
Kristian G Andersen
1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA
9Scripps Translational Science Institute, La Jolla, CA 92037, USA
24Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
Article usage
Posted February 03, 2017.
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology
Nathan D Grubaugh, Jason T Ladner, Moritz UG Kraemer, Gytis Dudas, Amanda L Tan, Karthik Gangavarapu, Michael R Wiley, Stephen White, Julien Thézé, Diogo M Magnani, Karla Prieto, Daniel Reyes, Andrea Bingham, Lauren M Paul, Refugio Robles-Sikisaka, Glenn Oliveira, Darryl Pronty, Hayden C Metsky, Mary Lynn Baniecki, Kayla G Barnes, Bridget Chak, Catherine A Freije, Adrianne Gladden-Young, Andreas Gnirke, Cynthia Luo, Bronwyn MacInnis, Christian B Matranga, Daniel J Park, James Qu, Stephen F Schaffner, Christopher Tomkins-Tinch, Kendra L West, Sarah M Winnicki, Shirlee Wohl, Nathan L Yozwiak, Joshua Quick, Joseph R Fauver, Kamran Khan, Shannon E Brent, Robert C Reiner Jr., Paola N Lichtenberger, Michael Ricciardi, Varian K Bailey, David I Watkins, Marshall R Cone, Edgar W Kopp IV, Kelly N Hogan, Andrew C Cannons, Reynald Jean, Robert F Garry, Nicholas J Loman, Nuno R Faria, Mario C Porcelli, Chalmers Vasquez, Elyse R Nagle, Derek AT Cummings, Danielle Stanek, Andrew Rambaut, Mariano Sanchez-Lockhart, Pardis C Sabeti, Leah D Gillis, Scott F Michael, Trevor Bedford, Oliver G Pybus, Sharon Isern, Gustavo Palacios, Kristian G Andersen
bioRxiv 104794; doi: https://doi.org/10.1101/104794
Multiple introductions of Zika virus into the United States revealed through genomic epidemiology
Nathan D Grubaugh, Jason T Ladner, Moritz UG Kraemer, Gytis Dudas, Amanda L Tan, Karthik Gangavarapu, Michael R Wiley, Stephen White, Julien Thézé, Diogo M Magnani, Karla Prieto, Daniel Reyes, Andrea Bingham, Lauren M Paul, Refugio Robles-Sikisaka, Glenn Oliveira, Darryl Pronty, Hayden C Metsky, Mary Lynn Baniecki, Kayla G Barnes, Bridget Chak, Catherine A Freije, Adrianne Gladden-Young, Andreas Gnirke, Cynthia Luo, Bronwyn MacInnis, Christian B Matranga, Daniel J Park, James Qu, Stephen F Schaffner, Christopher Tomkins-Tinch, Kendra L West, Sarah M Winnicki, Shirlee Wohl, Nathan L Yozwiak, Joshua Quick, Joseph R Fauver, Kamran Khan, Shannon E Brent, Robert C Reiner Jr., Paola N Lichtenberger, Michael Ricciardi, Varian K Bailey, David I Watkins, Marshall R Cone, Edgar W Kopp IV, Kelly N Hogan, Andrew C Cannons, Reynald Jean, Robert F Garry, Nicholas J Loman, Nuno R Faria, Mario C Porcelli, Chalmers Vasquez, Elyse R Nagle, Derek AT Cummings, Danielle Stanek, Andrew Rambaut, Mariano Sanchez-Lockhart, Pardis C Sabeti, Leah D Gillis, Scott F Michael, Trevor Bedford, Oliver G Pybus, Sharon Isern, Gustavo Palacios, Kristian G Andersen
bioRxiv 104794; doi: https://doi.org/10.1101/104794
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