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- March 4, 2017.
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- Version 1 (January 9, 2017 - 08:45).
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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY 4.0 International license.
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- Surya Sahaαβ1*,
- Prashant S Hosmaniαβ1*,
- Krystal Villalobos-Ayalaαβ2,
- Sherry Millerαβ3,
- Teresa Shippyαβ3,
- Mirella Floresαβ1,
- Andrew Rosendaleαβ4,
- Chris Cordolaβ2,
- Tracey Bellβ2,
- Hannah Mannβ2,
- Gabe DeAvilaβ2,
- Daniel DeAvilaβ2,
- Zachary Mooreβ4,
- Kyle Bullerβ4,
- Kathryn Ciolkevichβ4,
- Samantha Nandyalβ4,
- Robert Mahoneyβ4,
- Joshua Van Voorhisβ4,
- Megan Dunlevyβ4,
- David Farrowβ4,
- David Hunterβ3,
- Taylar Morganβ3,
- Kayla Shoreβ3,
- Victoria Guzmanβ3,
- Allison Izsakβ5,
- Danielle E Dixonβ1,6,
- Andrew Cridgeβ7,
- Liliana Canoβ8,
- Xialong Cao–14,
- Haobo Jiang–15,
- Nan Leng–13,
- Shannon Johnson–9,
- Brandi L Cantarel–10,
- Stephen Richardson–11,12,
- Adam English–11,12,
- Robert G Shatters–18,
- Chris Childersα16,
- Mei-Ju Chenα17,
- Wayne Hunter–β–18,
- Michelle Cilia–19,20,
- Lukas A Mueller–1,21,
- Monica Munoz-Torresαβ22,
- David Nelsonα23,
- Monica F Poelchauα16,
- Joshua B Benoitβ–4,
- Helen Wiersma-Kochαβ2,
- Tom D’eliaβ–2 and
- Susan J Brownβ–3
- 1Boyce Thompson Institute, Ithaca, NY 14853, USA
- 2Indian River State College, Fort Pierce, FL 34981, USA
- 3Kansas State University, Division of Biology, Manhattan, KS 66506, USA
- 4University of Cincinnati, Cincinnati, OH 45220, USA
- 5Cornell University, Ithaca, NY 14853, USA
- 6University of Puget Sound, Tacoma, WA 98416, USA
- 7University of Otago, North Dunedin, Dunedin 9016, New Zealand
- 8University of Florida/ IFAS Indian River Research and Education Center, Plant Pathology, Ft. Pierce, FL 34945, USA
- 9Los Alamos National Laboratory, NM 87544, USA
- 10UT Southwestern Medical Center, Bioinformatics Core Facility, Department of Bioinformatics, Dallas, TX 75390, USA
- 11Baylor College of Medicine, i5K Arthropod Genomics, Houston, TX 77030, USA
- 12Baylor College of Medicine, Human Genome Sequencing Center, Houston, TX 77030, USA
- 13Illumina Inc., San Diego, CA 92122, USA
- 14Oklahoma State University, Department of Biochemistry and Molecular Biology, Stillwater, OK 74074, USA
- 15Oklahoma State University, Department of Entomology and Plant Pathology, Stillwater, OK 74074, USA
- 16USDA Agricultural Research Service, National Agricultural Library, Beltsville, MD 20705, USA
- 17National Taiwan University, Graduate Institute of Biomedical Electronics and Bioinformatics, Taipei 10617, TW
- 18USDA ARS, U. S. Horticultural Research Laboratory, Ft. Pierce, FL 34945, USA
- 19USDA ARS, Emerging Pests and Pathogens Research Unit, Ithaca, NY 14853, USA
- 20Cornell University, Plant Pathology and Plant-Microbe Biology Section, School of Integrative Plant Science, Ithaca, NY 14853, USA
- 21Cornell University, Plant Breeding and Genetics Section, School of Integrative Plant Science, Ithaca, NY 14853, USA
- 22Lawrence Berkeley National Laboratory, Environmental Genomics and Systems Biology, Berkeley, CA 94720, USA
- 23The University of Tennessee Health Science Center, Department of Microbiology, Immunology and Biochemistry, Memphis, TN 38163, USA
- Correspondence should be addressed to Surya Saha (ss2489{at}cornell.edu).
↵* Surya Saha and Prashant S. Hosmani contributed equally to this work.
AUTHOR CONTRIBUTIONS SS, PSH, KVA, SM, TS, AR, CC, TB, HM, GD, DD, ZM, KB, KC, SN, RM, JVV, MD, DF, DH, TM, KS, VG, AI, DED, LC, AC, CC, MC, MF, WH, MMT, DN, MFP, JB, HKW, TD and SJB contributed to the community curation. MMT conducted the initial training for student annotators and provided consultation during the project. XC, HJ and MF generated the MCOT v1.0 transcriptome. WH, SJ, BLC, SR, AE and NL were involved in the genome sequencing. WH, MC, LAM, JB, TD and SJB were the Principal Investigators involved in this work. SS, PSH, SM, TS, MF, WH, MC, MMT, DN, MFP, JB, TD and SJB wrote the final manuscript.