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Like Sugar in Milk: Reconstructing the genetic history of the Parsi population

Gyaneshwer Chaubey Sr., Qasim Ayub Sr., Niraj Rai, Satya Prakash, Veena Mushrif-Tripathy, Massimo Mezzavilla, Ajai Kumar Pathak, Rakesh Tamang, Sadaf Firasat, Maere Reidla, Monika Karmin, Deepa Selvi Rani, Alla G Reddy, Juri Parik, Ene Metspalu, Siiri Rootsi, Kurush Dalal, Sagufta Khaliq, Syed Qasim Mehdi, Lalji Singh, Mait Metspalu, Toomas Kivisild, Chris Tyler-Smith, Richard Villems, Kumarasamy Thangaraj
doi: https://doi.org/10.1101/128777
Gyaneshwer Chaubey
Estonian Biocentre;
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  • For correspondence: gyanc@ebc.ee
Qasim Ayub
Sanger Institute, UK;
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Niraj Rai
CSIR-CCMB, Hyderabad, India;
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Satya Prakash
CSIR-CCMB, Hyderabad, India;
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Veena Mushrif-Tripathy
Deccan College, Pune, India;
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Massimo Mezzavilla
Sanger Institute, UK;
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Ajai Kumar Pathak
Estonian Biocentre, Estonia;
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Rakesh Tamang
University of Kolkata, India;
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Sadaf Firasat
Centre for Human Genetics and Molecular Medicine, Karachi, Pakistan;
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Maere Reidla
Estonian Biocentre, Estonia;
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Monika Karmin
Estonian Biocentre, Estonia;
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Deepa Selvi Rani
CSIR-CCMB, Hyderabad, India;
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Alla G Reddy
CSIR-CCMB, Hyderabad, India;
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Juri Parik
Estonian Biocentre, Estonia;
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Ene Metspalu
Estonian Biocentre, Estonia;
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Siiri Rootsi
Estonian Biocentre, Estonia;
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Kurush Dalal
University of Mumbai, India;
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Sagufta Khaliq
University of Health Science, Lahore;
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Syed Qasim Mehdi
Centre for Human Genetics, Karachi, Pakistan;
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Lalji Singh
Genome Foundation, India;
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Mait Metspalu
Estonian Biocentre, Estonia;
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Toomas Kivisild
University of Cambridge, UK;
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Chris Tyler-Smith
Sanger Institute, UK;
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Richard Villems
Estonian Biocentre, Estonia;
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Kumarasamy Thangaraj
CSIR-CCMB Hyderabad, India
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Abstract

Background: The Parsis, one of the smallest religious community in the world, reside in South Asia. Previous genetic studies on them, although based on low resolution markers, reported both Iranian and Indian ancestries. To understand the population structure and demographic history of this group in more detail, we analyzed Indian and Pakistani Parsi populations using high-resolution autosomal and uniparental (Y-chromosomal and mitochondrial DNA) markers. Additionally, we also assayed 108 mitochondrial DNA markers among 21 ancient Parsi DNA samples excavated from Sanjan, in present day Gujarat, the place of their original settlement in India. Results: Our extensive analyses indicated that among present-day populations, the Parsis are genetically closest to Middle Eastern (Iranian and the Caucasus) populations rather than their South Asian neighbors. They also share the highest number of haplotypes with present-day Iranians and we estimate that the admixture of the Parsis with Indian populations occurred ~1,200 years ago. Enriched homozygosity in the Parsi reflects their recent isolation and inbreeding. We also observed 48% South-Asian-specific mitochondrial lineages among the ancient samples, which might have resulted from the assimilation of local females during the initial settlement. Conclusions: We show that the Parsis are genetically closest to the Neolithic Iranians, followed by present-day Middle Eastern populations rather than those in South Asia and provide evidence of sex-specific admixture from South Asians to the Parsis. Our results are consistent with the historically-recorded migration of the Parsi populations to South Asia in the 7th century and in agreement with their assimilation into the Indian subcontinent population and cultural milieu like sugar in milk. Moreover, in a wider context, our results suggest a major demographic transition in West Asia due to Islamic-conquest.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted April 19, 2017.

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Like Sugar in Milk: Reconstructing the genetic history of the Parsi population
Gyaneshwer Chaubey Sr., Qasim Ayub Sr., Niraj Rai, Satya Prakash, Veena Mushrif-Tripathy, Massimo Mezzavilla, Ajai Kumar Pathak, Rakesh Tamang, Sadaf Firasat, Maere Reidla, Monika Karmin, Deepa Selvi Rani, Alla G Reddy, Juri Parik, Ene Metspalu, Siiri Rootsi, Kurush Dalal, Sagufta Khaliq, Syed Qasim Mehdi, Lalji Singh, Mait Metspalu, Toomas Kivisild, Chris Tyler-Smith, Richard Villems, Kumarasamy Thangaraj
bioRxiv 128777; doi: https://doi.org/10.1101/128777
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Like Sugar in Milk: Reconstructing the genetic history of the Parsi population
Gyaneshwer Chaubey Sr., Qasim Ayub Sr., Niraj Rai, Satya Prakash, Veena Mushrif-Tripathy, Massimo Mezzavilla, Ajai Kumar Pathak, Rakesh Tamang, Sadaf Firasat, Maere Reidla, Monika Karmin, Deepa Selvi Rani, Alla G Reddy, Juri Parik, Ene Metspalu, Siiri Rootsi, Kurush Dalal, Sagufta Khaliq, Syed Qasim Mehdi, Lalji Singh, Mait Metspalu, Toomas Kivisild, Chris Tyler-Smith, Richard Villems, Kumarasamy Thangaraj
bioRxiv 128777; doi: https://doi.org/10.1101/128777

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