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Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea

Qinfei Li, Zhiyong Xiong, Jiaqin Mei, Hongyuan Song, Wei Qian
doi: https://doi.org/10.1101/148940
Qinfei Li
College of Horticulture and Landscape Architecture, Southwest University;
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  • For correspondence: feifei1984998@126.com
Zhiyong Xiong
Inner Mongolia Potato Engineering & Technology Research Centre, Inner Mongolia University;
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Jiaqin Mei
College of Agronomy and Biotechnology, Southwest University
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Hongyuan Song
College of Horticulture and Landscape Architecture, Southwest University;
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Wei Qian
College of Agronomy and Biotechnology, Southwest University
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Abstract

Good fertility was observed previously in hexaploid derived from hybrid (ACC) between calona “Zhongshuang 9” (Brassica napus, 2n = 38, AACC) and kale “SWU01” (B. oleracea var. acephala, 2n = 18, CC). However, the mechanism to underlying the character is unknown. In the present study, genetic and epigenetic alterations of S0, 6 S1, and 18 of their S2 progenies with hexaploid chromosome conformation (20A+36C) were selected to compare with ACC and their parental species. 13.08% and 26.45% polymorphism alleles different from two parental species were identified in ACC via 58 SSR (simple sequence repeats) and 14 MSAP (methylation sensitive amplified polymorphism), respectively. 33.74% new alleles in DNA methylation, but not in DNA sequence were detected in S0 after chromosome doubling of ACC. DNA profilling revealed a little genetic but much epigenetic differences among S0, S1 and S2 generations. Genetic alteration was relatively stable, because only 8.09% and 3.21% alleles inheriated from ACC were changed in S2 and S1, respectively. While on average of 52.44 plus or minus 5.32% DNA methylation site inherited from ACC were detected in S1, and 41.52 plus or minus 9.04% in S2 due to dramatic epigenetic variance among early generations. New DNA methylation sites occurred in S0 would inheritated into the successive generations, but the frequency was decreased because some new site might be recovered. It demonstrated that much DNA methylation but a little DNA sequence variance was occurred in hexaploid early generation.

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The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted June 12, 2017.

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Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea
Qinfei Li, Zhiyong Xiong, Jiaqin Mei, Hongyuan Song, Wei Qian
bioRxiv 148940; doi: https://doi.org/10.1101/148940
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Genetics and epigenetic alterations of hexaploid early generation derived from hybrid between Brassica napus and B. oleracea
Qinfei Li, Zhiyong Xiong, Jiaqin Mei, Hongyuan Song, Wei Qian
bioRxiv 148940; doi: https://doi.org/10.1101/148940

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