New Results
Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Sam Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason
doi: https://doi.org/10.1101/156919
Alexa B. R. McIntyre
1Tri-Institutional Program in Computational Biology and Medicine, NY
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Rachid Ounit
4Department of Computer Science and Engineering, University of California, Riverside, CA 92521, USA
Ebrahim Afshinnekoo
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
5School of Medicine, New York Medical College, Valhalla, NY 10595, USA
Robert J. Prill
6Accelerated Discovery Lab, IBM Almaden Research Center, San Jose, CA 95120, USA
Elizabeth Hénaff
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Noah Alexander
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Sam Minot
7One Codex, Reference Genomics, San Francisco, CA 94103, USA
David Danko
1Tri-Institutional Program in Computational Biology and Medicine, NY
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Jonathan Foox
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Sofia Ahsanuddin
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
Scott Tighe
8University of Vermont, Burlington, VT 05405, USA
Nur A. Hasan
9CosmosID, Inc., Rockville, MD 20850, USA
10Center for Bioinformatics and Computational Biology, University of Maryland Institute for Advanced Computer Studies (UMIACS), College Park, MD 20742, USA
Poorani Subramanian
9CosmosID, Inc., Rockville, MD 20850, USA
Kelly Moffat
9CosmosID, Inc., Rockville, MD 20850, USA
Shawn Levy
11HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
Stefano Lonardi
4Department of Computer Science and Engineering, University of California, Riverside, CA 92521, USA
Nick Greenfield
7One Codex, Reference Genomics, San Francisco, CA 94103, USA
Rita R. Colwell
9CosmosID, Inc., Rockville, MD 20850, USA
12Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA
Gail L. Rosen
13Department of Electrical and Computer Engineering, Drexel University, Philadelphia, PA 19104, USA
Christopher E. Mason
2Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10021 USA
3The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, New York, NY10021, USA
14The Feil Family Brain and Mind Research Institute, New York, NY 10065, USA
Article usage
Posted June 28, 2017.
Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Sam Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason
bioRxiv 156919; doi: https://doi.org/10.1101/156919
Comprehensive Benchmarking and Ensemble Approaches for Metagenomic Classifiers
Alexa B. R. McIntyre, Rachid Ounit, Ebrahim Afshinnekoo, Robert J. Prill, Elizabeth Hénaff, Noah Alexander, Sam Minot, David Danko, Jonathan Foox, Sofia Ahsanuddin, Scott Tighe, Nur A. Hasan, Poorani Subramanian, Kelly Moffat, Shawn Levy, Stefano Lonardi, Nick Greenfield, Rita R. Colwell, Gail L. Rosen, Christopher E. Mason
bioRxiv 156919; doi: https://doi.org/10.1101/156919
Subject Area
Subject Areas
- Biochemistry (11703)
- Bioengineering (8718)
- Bioinformatics (29127)
- Biophysics (14930)
- Cancer Biology (12048)
- Cell Biology (17353)
- Clinical Trials (138)
- Developmental Biology (9406)
- Ecology (14143)
- Epidemiology (2067)
- Evolutionary Biology (18266)
- Genetics (12219)
- Genomics (16765)
- Immunology (11841)
- Microbiology (28003)
- Molecular Biology (11551)
- Neuroscience (60804)
- Paleontology (450)
- Pathology (1864)
- Pharmacology and Toxicology (3229)
- Physiology (4939)
- Plant Biology (10383)
- Synthetic Biology (2877)
- Systems Biology (7333)
- Zoology (1642)