New Results
Online resources for PCAWG data exploration, visualization, and discovery
Mary Goldman, Junjun Zhang, Nuno A. Fonseca, Qian Xiang, Brian Craft, Elena Pineiro, Brian D O'Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz, Robert Petryszak, Anja Füllgrabe, Fatima Al-Shahrour, Maria Keays, David Haussler, John Weinstein, Wolfgang Huber, Alfonso Valencia, Irene Papatheodorou, Jingchun Zhu, Vincent Ferreti, Miguel Vazquez, PCAWG-12 Working Group, PCAWG Network
doi: https://doi.org/10.1101/163907
Mary Goldman
1UC Santa Cruz Genomics Institute, Santa Cruz, 95064, USA;
Junjun Zhang
2Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada;
Nuno A. Fonseca
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Qian Xiang
2Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada;
Brian Craft
1UC Santa Cruz Genomics Institute, Santa Cruz, 95064, USA;
Elena Pineiro
4Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, 28029, Spain;
Brian D O'Connor
1UC Santa Cruz Genomics Institute, Santa Cruz, 95064, USA;
Wojciech Bazant
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Elisabet Barrera
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Alfonso Muñoz
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Robert Petryszak
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Anja Füllgrabe
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Fatima Al-Shahrour
4Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO), Madrid, 28029, Spain;
Maria Keays
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
David Haussler
1UC Santa Cruz Genomics Institute, Santa Cruz, 95064, USA;
John Weinstein
5UT MD Anderson Cancer Center, Houston, 77030, USA;
Wolfgang Huber
6European Molecular Biology Laboratory, Heidelberg, 69117, Germany;
Alfonso Valencia
7Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain;
Irene Papatheodorou
3European Molecular Biology Laboratory, European Bioinformatics Institute, EMBL-EBI, Hinxton, CB10 1SD, UK;
Jingchun Zhu
1UC Santa Cruz Genomics Institute, Santa Cruz, 95064, USA;
Vincent Ferreti
2Ontario Institute for Cancer Research, Toronto, ON M5G 0A3, Canada;
Miguel Vazquez
7Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), 28029 Madrid, Spain;
8PCAWG-12 working group: Exploratory: portals, visualization and software infrastructure
8PCAWG-12 working group: Exploratory: portals, visualization and software infrastructure
Abstract
The PanCancer Analysis of Whole Genomes (PCAWG) cohort provides a large, uniformly-analyzed, whole-genome dataset. From the PCAWG Landing Page (http://docs.icgc.org/pcawg), users can access online resources for downloading, visualizing, and exploring this data: The ICGC Data Portal, UCSC Xena, Expression Atlas, and PCAWG-Scout. They enable researchers to dynamically query and integrate the complex genomics data, explore tumors’ molecular landscapes, and combine external information with the PCAWG data to facilitate its interpretation.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Posted July 14, 2017.
Online resources for PCAWG data exploration, visualization, and discovery
Mary Goldman, Junjun Zhang, Nuno A. Fonseca, Qian Xiang, Brian Craft, Elena Pineiro, Brian D O'Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz, Robert Petryszak, Anja Füllgrabe, Fatima Al-Shahrour, Maria Keays, David Haussler, John Weinstein, Wolfgang Huber, Alfonso Valencia, Irene Papatheodorou, Jingchun Zhu, Vincent Ferreti, Miguel Vazquez, PCAWG-12 Working Group, PCAWG Network
bioRxiv 163907; doi: https://doi.org/10.1101/163907
Online resources for PCAWG data exploration, visualization, and discovery
Mary Goldman, Junjun Zhang, Nuno A. Fonseca, Qian Xiang, Brian Craft, Elena Pineiro, Brian D O'Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz, Robert Petryszak, Anja Füllgrabe, Fatima Al-Shahrour, Maria Keays, David Haussler, John Weinstein, Wolfgang Huber, Alfonso Valencia, Irene Papatheodorou, Jingchun Zhu, Vincent Ferreti, Miguel Vazquez, PCAWG-12 Working Group, PCAWG Network
bioRxiv 163907; doi: https://doi.org/10.1101/163907
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