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Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity

Yongchan Lee, Tomohiro Nishizawa, Mizuki Takemoto, Kaoru Kumazaki, Keitaro Yamashita, Kunio Hirata, Ayumi Minoda, Satoru Nagatoishi, Kouhei Tsumoto, Ryuichiro Ishitani, Osamu Nureki
doi: https://doi.org/10.1101/169169
Yongchan Lee
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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Tomohiro Nishizawa
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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Mizuki Takemoto
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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Kaoru Kumazaki
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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Keitaro Yamashita
RIKEN SPring-8 Center;
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Kunio Hirata
RIKEN SPring-8 Center;
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Ayumi Minoda
Faculty of Life and Environmental Sciences, University of Tsukuba;
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Satoru Nagatoishi
Department of Bioengineering, School of Engineering, The University of Tokyo
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Kouhei Tsumoto
Department of Bioengineering, School of Engineering, The University of Tokyo
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Ryuichiro Ishitani
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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Osamu Nureki
Department of Biological Sciences, Graduate School of Science, The University of Tokyo;
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  • For correspondence: nureki@bs.s.u-tokyo.ac.jp
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Abstract

The triose-phosphate/phosphate translocator (TPT) catalyzes the strict 1:1 exchange of triose phosphate, 3-phosphoglycerate and inorganic phosphate across the chloroplast envelope, and plays crucial roles in photosynthesis. Despite rigorous studies for more than 40 years, the molecular mechanism of TPT is poorly understood due to the lack of structural information. Here we report crystal structures of TPT bound to two different substrates, 3-phosphoglycerate and inorganic phosphate, in occluded conformations. The structures reveal that TPT adopts a 10-transmembrane drug/metabolite transporter fold. Both substrates are bound within the same central pocket, where conserved lysine, arginine, and tyrosine residues recognize the shared phosphate group. A structural comparison with the outward-open conformation of the bacterial drug/metabolite transporter suggests a rocking-type motion of helix bundles, and molecular dynamics simulations support a model in which this helix rocking is tightly coupled to the substrate binding, to ensure strict 1:1 exchange. These results reveal the unique mechanism of sugar phosphate/phosphate exchange by TPT.

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  • Posted August 18, 2017.

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Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity
Yongchan Lee, Tomohiro Nishizawa, Mizuki Takemoto, Kaoru Kumazaki, Keitaro Yamashita, Kunio Hirata, Ayumi Minoda, Satoru Nagatoishi, Kouhei Tsumoto, Ryuichiro Ishitani, Osamu Nureki
bioRxiv 169169; doi: https://doi.org/10.1101/169169
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Structure of the triose-phosphate/phosphate translocator reveals the basis of substrate specificity
Yongchan Lee, Tomohiro Nishizawa, Mizuki Takemoto, Kaoru Kumazaki, Keitaro Yamashita, Kunio Hirata, Ayumi Minoda, Satoru Nagatoishi, Kouhei Tsumoto, Ryuichiro Ishitani, Osamu Nureki
bioRxiv 169169; doi: https://doi.org/10.1101/169169

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