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Genetic Analysis of Deep Phenotyping Projects in Common Disorders

View ORCID ProfileElliot S Gershon, View ORCID ProfileGodfrey Pearlson, View ORCID ProfileMatcheri S Keshavan, Carol Tamminga, Brett Clementz, Peter F Buckley, Ney Alliey-Rodriguez, Chunyu Liu, John A Sweeney, View ORCID ProfileSarah Keedy, View ORCID ProfileShashwath Meda, Neeraj Tandon, Rebecca Shafee, Jeffrey R Bishop, View ORCID ProfileElena I Ivleva
doi: https://doi.org/10.1101/197459
Elliot S Gershon
University of Chicago;
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  • For correspondence: egershon@yoda.bsd.uchicago.edu
Godfrey Pearlson
Yale University Departments of Psychiatry & Neuroscience;
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Matcheri S Keshavan
Harvard Medical School, Department of Psychiatry;
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Carol Tamminga
Department of Psychiatry, University of Texas Southwestern Medical Center;
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Brett Clementz
Department of Psychology, University of Georgia, Athens;
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Peter F Buckley
School of Medicine Virginia Commonwealth University;
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Ney Alliey-Rodriguez
University of Chicago;
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Chunyu Liu
University of Illinois at Chicago;
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John A Sweeney
Department of Psychiatry, University of Texas Southwestern Medical Center;
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Sarah Keedy
University of Chicago;
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Shashwath Meda
Yale University Departments of Psychiatry & Neuroscience;
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Neeraj Tandon
Beth Israel Deaconess Medical Center, Dept of Psychiatry, Harvard Medical School;
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Rebecca Shafee
Department of Genetics, Harvard Medical School;
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Jeffrey R Bishop
Department of Clinical and Experimental Pharmacology, University of Minnesota
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Elena I Ivleva
Department of Psychiatry, University of Texas Southwestern Medical Center;
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Abstract

Several studies of complex psychotic disorders with large numbers of neurobiological phenotypes are currently under way, in living patients and controls, and on assemblies of brain specimens. Genetic analyses of such data typically present challenges, because of the choice of underlying hypotheses on genetic architecture of the studied disorders and phenotypes, large numbers of phenotypes, the appropriate multiple testing corrections, limited numbers of subjects, imputations required on missing phenotypes and genotypes, and the cross-disciplinary nature of the phenotype measures. Advances in genotype and phenotype imputation, and in genome-wide association (GWAS) methods, are useful in dealing with these challenges. As compared with the more traditional single-trait analyses, deep phenotyping with simultaneous genome-wide analyses serves as a discovery tool for previously unsuspected relationships of phenotypic traits with each other, and with specific molecular involvements.

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The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted October 2, 2017.

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Genetic Analysis of Deep Phenotyping Projects in Common Disorders
Elliot S Gershon, Godfrey Pearlson, Matcheri S Keshavan, Carol Tamminga, Brett Clementz, Peter F Buckley, Ney Alliey-Rodriguez, Chunyu Liu, John A Sweeney, Sarah Keedy, Shashwath Meda, Neeraj Tandon, Rebecca Shafee, Jeffrey R Bishop, Elena I Ivleva
bioRxiv 197459; doi: https://doi.org/10.1101/197459
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Genetic Analysis of Deep Phenotyping Projects in Common Disorders
Elliot S Gershon, Godfrey Pearlson, Matcheri S Keshavan, Carol Tamminga, Brett Clementz, Peter F Buckley, Ney Alliey-Rodriguez, Chunyu Liu, John A Sweeney, Sarah Keedy, Shashwath Meda, Neeraj Tandon, Rebecca Shafee, Jeffrey R Bishop, Elena I Ivleva
bioRxiv 197459; doi: https://doi.org/10.1101/197459

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