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Deep Learning for Multi-task Plant Phenotyping

View ORCID ProfileMichael P Pound, View ORCID ProfileJonathan A Atkinson, View ORCID ProfileDarren M Wells, View ORCID ProfileTony P Pridmore, View ORCID ProfileAndrew P French
doi: https://doi.org/10.1101/204552
Michael P Pound
University of Nottingham
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Jonathan A Atkinson
University of Nottingham
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Darren M Wells
University of Nottingham
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Tony P Pridmore
University of Nottingham
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Andrew P French
University of Nottingham
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  • For correspondence: andrew.p.french@nottingham.ac.uk
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Abstract

Plant phenotyping has continued to pose a challenge to computer vision for many years. There is a particular demand to accurately quantify images of crops, and the natural variability and structure of these plants presents unique difficulties. Recently, machine learning approaches have shown impressive results in many areas of computer vision, but these rely on large datasets that are at present not available for crops. We present a new dataset, called ACID, that provides hundreds of accurately annotated images of wheat spikes and spikelets, along with image level class annotation. We then present a deep learning approach capable of accurately localising wheat spikes and spikelets, despite the varied nature of this dataset. As well as locating features, our network offers near perfect counting accuracy for spikes (95.91%) and spikelets (99.66%). We also extend the network to perform simultaneous classification of images, demonstrating the power of multi-task deep architectures for plant phenotyping. We hope that our dataset will be useful to researchers in continued improvement of plant and crop phenotyping. With this in mind, alongside the dataset we will make all code and trained models available online.

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The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-ND 4.0 International license.
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  • Posted October 17, 2017.

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Deep Learning for Multi-task Plant Phenotyping
Michael P Pound, Jonathan A Atkinson, Darren M Wells, Tony P Pridmore, Andrew P French
bioRxiv 204552; doi: https://doi.org/10.1101/204552
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Deep Learning for Multi-task Plant Phenotyping
Michael P Pound, Jonathan A Atkinson, Darren M Wells, Tony P Pridmore, Andrew P French
bioRxiv 204552; doi: https://doi.org/10.1101/204552

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