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The Evolutionary Genomic Dynamics of Peruvians Before, During, and After the Inca Empire

Daniel N Harris, Wei Song, Amol C Shetty, Kelly Levano, Omar Caceres, Carlos Padilla, Victor Borda, David Tarazona, Omar Trujillo, Cesar Sanchez, Michael D Kessler, Marco Galarza, Silvia Capristano, Harrison Montejo, Pedro O Flores-Villanueva, Eduardo Tarazona-Santos, Timothy D O'Connor, Heinner Guio
doi: https://doi.org/10.1101/219808
Daniel N Harris
Institute for Genome Sciences, University of Maryland School of Medicine;
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Wei Song
Institute for Genome Sciences, University of Maryland School of Medicine;
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Amol C Shetty
Institute for Genome Sciences, University of Maryland School of Medicine;
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Kelly Levano
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Omar Caceres
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Carlos Padilla
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Victor Borda
Dept. de Biologia Geral, Inst. de Ciencias Biologicas, Univ. Federal de Minas Gerais;
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David Tarazona
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Omar Trujillo
Centro Nacional de Salud Intercultural, Instituto Nacional de Salud, Lima, Peru
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Cesar Sanchez
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Michael D Kessler
Institute for Genome Sciences, University of Maryland School of Medicine;
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Marco Galarza
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Silvia Capristano
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Harrison Montejo
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Pedro O Flores-Villanueva
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Eduardo Tarazona-Santos
Dept. de Biologia Geral, Inst. de Ciencias Biologicas, Univ. Federal de Minas Gerais;
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Timothy D O'Connor
Institute for Genome Sciences, University of Maryland School of Medicine;
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  • For correspondence: timothydoconnor@gmail.com
Heinner Guio
Lab. de Biotecnologia y Biologia Molecular, Inst. Nacional de Salud, Lima, Peru;
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Abstract

Native Americans from the Amazon, Andes, and coast regions of South America have a rich cultural heritage, but have been genetically understudied leading to gaps in our knowledge of their genomic architecture and demographic history. Here, we sequenced 150 high-coverage and genotyped 130 genomes from Native American and mestizo populations in Peru. A majority of our samples possess greater than 90% Native American ancestry and demographic modeling reveals, consistent with a rapid peopling model of the Americas, that most of Peru was peopled approximately 12,000 years ago. While the Native American populations possessed distinct ancestral divisions, the mestizo groups were admixtures of multiple Native American communities which occurred before and during the Inca Empire. The mestizo communities also show Spanish introgression only after Peruvian Independence. Thus, we present a detailed model of the evolutionary dynamics which impacted the genomes of modern day Peruvians.

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The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted November 16, 2017.

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The Evolutionary Genomic Dynamics of Peruvians Before, During, and After the Inca Empire
Daniel N Harris, Wei Song, Amol C Shetty, Kelly Levano, Omar Caceres, Carlos Padilla, Victor Borda, David Tarazona, Omar Trujillo, Cesar Sanchez, Michael D Kessler, Marco Galarza, Silvia Capristano, Harrison Montejo, Pedro O Flores-Villanueva, Eduardo Tarazona-Santos, Timothy D O'Connor, Heinner Guio
bioRxiv 219808; doi: https://doi.org/10.1101/219808
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The Evolutionary Genomic Dynamics of Peruvians Before, During, and After the Inca Empire
Daniel N Harris, Wei Song, Amol C Shetty, Kelly Levano, Omar Caceres, Carlos Padilla, Victor Borda, David Tarazona, Omar Trujillo, Cesar Sanchez, Michael D Kessler, Marco Galarza, Silvia Capristano, Harrison Montejo, Pedro O Flores-Villanueva, Eduardo Tarazona-Santos, Timothy D O'Connor, Heinner Guio
bioRxiv 219808; doi: https://doi.org/10.1101/219808

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