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Latin Americans show wide-spread Converso ancestry and the imprint of local Native ancestry on physical appearance

Juan C. Chacon-Duque, View ORCID ProfileKaustubh Adhikari, Macarena Fuentes-Guajardo, Javier Mendoza-Revilla, Victor Acuna-Alonzo, Rodrigo Barquera Lozano, Mirsha Quinto-Sanchez, Jorge Gomez-Valdes, Paola Everardo Martinez, Hugo Villamil-Ramirez, Tabita Hunemeier, Virginia Ramallo, Caio C. Silva de Cerqueira, Malena Hurtado, Valeria Villegas, Vanessa Granja, Mercedes Villena, Rene Vasquez, Elena Llop, Jose R. Sandoval, Alberto A. Salazar-Granara, Maria-Laura Parolin, Karla Sandoval, Rosenda I. Penaloza-Espinosa, Hector Rangel-Villalobos, Cheryl Winkler, William Klitz, Claudio Bravi, Julio Molina, Daniel Corach, Ramiro Barrantes, Veronica Gomes, Carlos Resende, Leonor Gusmao, Antonio Amorim, Yali Xue, Jean-Michel Dugoujon, Pedro Moral, Rolando Gonzalez-Jose, Lavinia Schuler-Faccini, Francisco M. Salzano, Maria-Catira Bortolini, Samuel Canizales-Quinteros, Giovanni Poletti, Carla Gallo, Gabriel Bedoya, Francisco Rothhammer, David Balding, Garrett Hellenthal, Andres Ruiz-Linares
doi: https://doi.org/10.1101/252155
Juan C. Chacon-Duque
University College London;
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Kaustubh Adhikari
University College London;
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  • ORCID record for Kaustubh Adhikari
Macarena Fuentes-Guajardo
University College London;
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Javier Mendoza-Revilla
University College London;
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Victor Acuna-Alonzo
University College London;
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Rodrigo Barquera Lozano
Escuela Nacional de Antropologia e Historia;
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Mirsha Quinto-Sanchez
Universidad Nacional Autonoma de Mexico;
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Jorge Gomez-Valdes
Escuela Nacional de Antropologia e Historia;
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Paola Everardo Martinez
Universidad Nacional Autonoma de Mexico;
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Hugo Villamil-Ramirez
Universidad Nacional Autonoma de Mexico;
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Tabita Hunemeier
Universidade de Sao Paulo;
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Virginia Ramallo
Inst Patagonico de Ciencias Sociales y Humanas-Centro Nacl Patagonico, CONICET;
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Caio C. Silva de Cerqueira
Universidade Federal do Rio Grande do Sul;
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Malena Hurtado
Universidad Peruana Cayetano Heredia;
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Valeria Villegas
Universidad Peruana Cayetano Heredia;
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Vanessa Granja
Universidad Peruana Cayetano Heredia;
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Mercedes Villena
Universidad Mayor de San Andres;
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Rene Vasquez
Thorek Hospital and Medical Center;
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Elena Llop
Universidad de Chile;
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Jose R. Sandoval
Universidad de San Martin de Porres;
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Alberto A. Salazar-Granara
Universidad de San Martin de Porres;
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Maria-Laura Parolin
Inst Patagonico de Ciencias Sociales y Humanas-Centro Nacl Patagonico, CONICET;
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Karla Sandoval
CINVESTAV;
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Rosenda I. Penaloza-Espinosa
Universidad Autonoma Metropolitana-Xochimilco;
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Hector Rangel-Villalobos
Universidad de Guadalajara;
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Cheryl Winkler
National Cancer Institute;
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William Klitz
University of California;
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Claudio Bravi
CONICET;
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Julio Molina
Centro de Investigaciones Biomedicas de Guatemala;
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Daniel Corach
Universidad de Buenos Aires;
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Ramiro Barrantes
Universidad de Costa Rica;
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Veronica Gomes
Instituto de Patologia e Inmunologia Molecular da Universidade do Porto;
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Carlos Resende
Instituto de Patologia e Inmunologia Molecular da Universidade do Porto;
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Leonor Gusmao
Instituto de Patologia e Inmunologia Molecular da Universidade do Porto;
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Antonio Amorim
Instituto de Patologia e Inmunologia Molecular da Universidade do Porto;
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Yali Xue
Sanger Institute;
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Jean-Michel Dugoujon
Universite Toulouse 3 Paul Sabatier;
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Pedro Moral
Universitat de Barcelona;
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Rolando Gonzalez-Jose
Inst Patagonico de Ciencias Sociales y Humanas-Centro Nacl Patagonico, CONICET;
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Lavinia Schuler-Faccini
Universidade Federal do Rio Grande do Sul;
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Francisco M. Salzano
Universidade Federal do Rio Grande do Sul;
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Maria-Catira Bortolini
Universidade Federal do Rio Grande do Sul;
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Samuel Canizales-Quinteros
Universidad Nacional Autonoma de Mexico;
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Giovanni Poletti
Universidad Peruana Cayetano Heredia;
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Carla Gallo
Universidad Peruana Cayetano Heredia;
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Gabriel Bedoya
Universidad de Costa Rica;
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Francisco Rothhammer
Universidad de Chile;
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David Balding
University of Melbourne;
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Garrett Hellenthal
University College London;
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Andres Ruiz-Linares
Fudan University
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  • For correspondence: andresruiz@fudan.edu.cn
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Abstract

Historical records and genetic analyses indicate that Latin Americans trace their ancestry mainly to the admixture of Native Americans, Europeans and Sub-Saharan Africans. Using novel haplotype-based methods here we infer the sub-populations involved in admixture for over 6,500 Latin Americans and evaluate the impact of sub-continental ancestry on the physical appearance of these individuals. We find that pre-Columbian Native genetic structure is mirrored in Latin Americans and that sources of non-Native ancestry, and admixture timings, match documented migratory flows. We also detect South/East Mediterranean ancestry across Latin America, probably stemming from the clandestine colonial migration of Christian converts of non-European origin (Conversos). Furthermore, we find that Central Andean ancestry impacts on variation of facial features in Latin Americans, particularly nose morphology, possibly relating to environmental adaptation during the evolution of Native Americans.

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  • Posted January 23, 2018.

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Latin Americans show wide-spread Converso ancestry and the imprint of local Native ancestry on physical appearance
Juan C. Chacon-Duque, Kaustubh Adhikari, Macarena Fuentes-Guajardo, Javier Mendoza-Revilla, Victor Acuna-Alonzo, Rodrigo Barquera Lozano, Mirsha Quinto-Sanchez, Jorge Gomez-Valdes, Paola Everardo Martinez, Hugo Villamil-Ramirez, Tabita Hunemeier, Virginia Ramallo, Caio C. Silva de Cerqueira, Malena Hurtado, Valeria Villegas, Vanessa Granja, Mercedes Villena, Rene Vasquez, Elena Llop, Jose R. Sandoval, Alberto A. Salazar-Granara, Maria-Laura Parolin, Karla Sandoval, Rosenda I. Penaloza-Espinosa, Hector Rangel-Villalobos, Cheryl Winkler, William Klitz, Claudio Bravi, Julio Molina, Daniel Corach, Ramiro Barrantes, Veronica Gomes, Carlos Resende, Leonor Gusmao, Antonio Amorim, Yali Xue, Jean-Michel Dugoujon, Pedro Moral, Rolando Gonzalez-Jose, Lavinia Schuler-Faccini, Francisco M. Salzano, Maria-Catira Bortolini, Samuel Canizales-Quinteros, Giovanni Poletti, Carla Gallo, Gabriel Bedoya, Francisco Rothhammer, David Balding, Garrett Hellenthal, Andres Ruiz-Linares
bioRxiv 252155; doi: https://doi.org/10.1101/252155
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Latin Americans show wide-spread Converso ancestry and the imprint of local Native ancestry on physical appearance
Juan C. Chacon-Duque, Kaustubh Adhikari, Macarena Fuentes-Guajardo, Javier Mendoza-Revilla, Victor Acuna-Alonzo, Rodrigo Barquera Lozano, Mirsha Quinto-Sanchez, Jorge Gomez-Valdes, Paola Everardo Martinez, Hugo Villamil-Ramirez, Tabita Hunemeier, Virginia Ramallo, Caio C. Silva de Cerqueira, Malena Hurtado, Valeria Villegas, Vanessa Granja, Mercedes Villena, Rene Vasquez, Elena Llop, Jose R. Sandoval, Alberto A. Salazar-Granara, Maria-Laura Parolin, Karla Sandoval, Rosenda I. Penaloza-Espinosa, Hector Rangel-Villalobos, Cheryl Winkler, William Klitz, Claudio Bravi, Julio Molina, Daniel Corach, Ramiro Barrantes, Veronica Gomes, Carlos Resende, Leonor Gusmao, Antonio Amorim, Yali Xue, Jean-Michel Dugoujon, Pedro Moral, Rolando Gonzalez-Jose, Lavinia Schuler-Faccini, Francisco M. Salzano, Maria-Catira Bortolini, Samuel Canizales-Quinteros, Giovanni Poletti, Carla Gallo, Gabriel Bedoya, Francisco Rothhammer, David Balding, Garrett Hellenthal, Andres Ruiz-Linares
bioRxiv 252155; doi: https://doi.org/10.1101/252155

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