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Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria

View ORCID ProfileThomas D Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, Mandy Sanders, Samuel Oyola, Alain P Okauga, Larson Boundenga, Eric Wuillaume, Barthélémy Ngoubangoye, Nancy Moukodoum, Christophe Paupy, Patrick Durand, Virginie Rougeron, Benjamin Ollomo, François Renaud, Chris Newbold, Matt Berriman, Franck Prugnolle
doi: https://doi.org/10.1101/095679
Thomas D Otto
Wellcome Trust Sanger Institute;
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  • For correspondence: tdo@sanger.ac.uk
Aude Gilabert
Laboratoire MIVEGEC, Montpellier;
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Thomas Crellen
Wellcome Trust Sanger Institute;
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Ulrike Böhme
Wellcome Trust Sanger Institute;
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Céline Arnathau
Laboratoire MIVEGEC Montpellier;
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Mandy Sanders
Wellcome Trust Sanger Institute;
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Samuel Oyola
Wellcome Trust Sanger Institute;
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Alain P Okauga
Centre International de Recherches Medicales de Franceville;
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Larson Boundenga
Centre International de Recherches Medicales de Franceville;
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Eric Wuillaume
Sodepal, Parc of la Lekedi;
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Barthélémy Ngoubangoye
Centre International de Recherches Medicales de Franceville;
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Nancy Moukodoum
Centre International de Recherches Medicales de Franceville;
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Christophe Paupy
Laboratoire MIVEGEC Montpellier;
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Patrick Durand
Centre International de Recherches Medicales de Franceville;
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Virginie Rougeron
Laboratoire MIVEGEC Montpellier;
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Benjamin Ollomo
Centre International de Recherches Medicales de Franceville;
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François Renaud
Laboratoire MIVEGEC Montpellier;
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Chris Newbold
Weatherall Institute of Molecular Medicine
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Matt Berriman
Wellcome Trust Sanger Institute;
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Franck Prugnolle
Laboratoire MIVEGEC Montpellier;
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Abstract

Plasmodium falciparum, the most virulent agent of human malaria, shares a recent common ancestor with the gorilla parasite P. praefalciparum. Little is known about the other gorilla and chimpanzee-infecting species in the same (Laverania) subgenus as P. falciparum but none of them are capable of establishing repeated infection and transmission in humans. To elucidate underlying mechanisms and the evolutionary history of this subgenus, we have generated multiple genomes from all known Laverania species. The completeness of our dataset allows us to conclude that interspecific gene transfers as well as convergent evolution were important in the evolution of these species. Striking copy number and structural variations were observed within gene families and one, stevor shows a host specific sequence pattern. The complete genome sequence of the closest ancestor of P. falciparum enables us to estimate confidently for the first time the timing of the beginning of speciation to be 40,000-60,000 years ago followed by a population bottleneck around 4,000-6,000 years ago. Our data allow us also to search in detail for the features of P. falciparum that made it the only member of the Laverania able to infect and spread in humans.

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  • Posted February 22, 2018.

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Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
Thomas D Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, Mandy Sanders, Samuel Oyola, Alain P Okauga, Larson Boundenga, Eric Wuillaume, Barthélémy Ngoubangoye, Nancy Moukodoum, Christophe Paupy, Patrick Durand, Virginie Rougeron, Benjamin Ollomo, François Renaud, Chris Newbold, Matt Berriman, Franck Prugnolle
bioRxiv 095679; doi: https://doi.org/10.1101/095679
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Genomes of all known members of a Plasmodium subgenus reveal paths to virulent human malaria
Thomas D Otto, Aude Gilabert, Thomas Crellen, Ulrike Böhme, Céline Arnathau, Mandy Sanders, Samuel Oyola, Alain P Okauga, Larson Boundenga, Eric Wuillaume, Barthélémy Ngoubangoye, Nancy Moukodoum, Christophe Paupy, Patrick Durand, Virginie Rougeron, Benjamin Ollomo, François Renaud, Chris Newbold, Matt Berriman, Franck Prugnolle
bioRxiv 095679; doi: https://doi.org/10.1101/095679

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