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Genetic correlations among psychiatric and immune-related phenotypes based on genome-wide association data.

Daniel S. Tylee, Jiayin Sun, Jonathan L. Hess, Muhammad A. Tahir, Esha Sharma, Rainer Malik, Bradford B. Worrall, Andrew J. Levine, Jeremy J. Martinson, Sergey Nejenstev, Doug Speed, Annegret Fischer, Eric Mick, Brian R. Walker, Andrew Crawford, Struan F. A. Grant, Constantin Polychronakos, Jonathan P. Bradfield, Patrick M. A. Sleiman, Hakon Hakonarson, Eva Ellinghaus, James T Elder, Lam C Tsoi, Richard C. Trembath, Jonathan N Barker, Andre Franke, Abbas Dehghan, The 23andMe Research Team, The Inflammation Working Group of the CHARGE Consortium, The METASTROKE Consortium of the International Stroke Genetics Consortium, The Netherlands Twin Registry, The neuroCHARGE Working Group, The Eating Disorders Working Groups of the Psychiatric Genomics Consortium, The Obsessive Compulsive Disorder and Tourette Syndrome Working Group, Stephen V Faraone, Stephen J Glatt
doi: https://doi.org/10.1101/070730
Daniel S. Tylee
SUNY Upstate Medical University, Syracuse, NY, U.S.A.;
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  • For correspondence: dantylee@gmail.com
Jiayin Sun
SUNY Upstate Medical University, Syracuse, NY, U.S.A.;
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Jonathan L. Hess
SUNY Upstate Medical University, Syracuse, NY, U.S.A.;
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Muhammad A. Tahir
SUNY Upstate Medical University, Syracuse, NY, U.S.A.;
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Esha Sharma
SUNY Upstate Medical University, Syracuse, NY, U.S.A.;
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Rainer Malik
Ludwig-Maximilians-University (LMU), Munich, Germany;
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Bradford B. Worrall
University of Virginia School of Medicine, Charlottesville, VA, U.S.A.;
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Andrew J. Levine
David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA;
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Jeremy J. Martinson
Graduate School of Public Health, University of Pittsburgh, PA, U.S.A.;
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Sergey Nejenstev
Department of Medicine, University of Cambridge, Cambridge, U.K.;
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Doug Speed
Genetics Institute, University College London, London, WC1E 6BT, U.K.;
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Annegret Fischer
Kiel University and University Hospital Schleswig-Holstein, Kiel, Germany.;
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Eric Mick
University of Massachusetts Medical School, Worcester, MA, U.S.A.;
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Brian R. Walker
University of Edinburgh, Edinburgh, EH16 4TJ, U.K.;
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Andrew Crawford
University of Edinburgh, Edinburgh, EH16 4TJ, U.K.;
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Struan F. A. Grant
The Childrens Hospital of Philadelphia, Philadelphia, PA, U.S.A.;
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Constantin Polychronakos
McGill University Health Centre, Montreal, Quebec, Canada;
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Jonathan P. Bradfield
The Childrens Hospital of Philadelphia, Philadelphia, PA, U.S.A.;
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Patrick M. A. Sleiman
The Childrens Hospital of Philadelphia, Philadelphia, PA, U.S.A.;
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Hakon Hakonarson
The Childrens Hospital of Philadelphia, Philadelphia, PA, U.S.A.;
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Eva Ellinghaus
Institute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany;
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James T Elder
Department of Dermatology, Veterans Affairs Hospital, University of Michigan, Ann Arbor, Michigan;
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Lam C Tsoi
Department of Biostatistics, University of Michigan, Ann Arbor, Michigan, United States of America.;
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Richard C. Trembath
Division of Genetics and Molecular Medicine, King's College London, London, UK;
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Jonathan N Barker
Centre for Environment and Health, School of Public Health, Imperial College London;
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Andre Franke
Institute of Clinical Molecular Biology, Christian Albrechts University of Kiel, Kiel, Germany.;
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Abbas Dehghan
Imperial College London;
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Stephen V Faraone
SUNY Upstate Medical University; Syracuse, NY, U.S.A.
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Stephen J Glatt
SUNY Upstate Medical University; Syracuse, NY, U.S.A.
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Abstract

Individuals with psychiatric disorders have elevated rates of autoimmune comorbidity and altered immune signaling. It is unclear whether these altered immunological states have a shared genetic basis with those psychiatric disorders. The present study sought to use existing summary-level data from previous genome-wide association studies (GWASs) to determine if commonly varying single nucleotide polymorphisms (SNPs) are shared between psychiatric and immune-related phenotypes. We estimated heritability and examined pair-wise genetic correlations using the linkage disequilibrium score regression (LDSC) and heritability estimation from summary statistics (HESS) methods. Using LDSC, we observed significant genetic correlations between immune-related disorders and several psychiatric disorders, including anorexia nervosa, attention deficit-hyperactivity disorder, bipolar disorder, major depression, obsessive compulsive disorder, schizophrenia, smoking behavior, and Tourette syndrome. Loci significantly mediating genetic correlations were identified for schizophrenia when analytically paired with Crohns disease, primary biliary cirrhosis, systemic lupus erythematosus, and ulcerative colitis. We report significantly correlated loci and highlight those containing genome-wide associations and candidate genes for respective disorders. We also used the LDSC method to characterize genetic correlations amongst the immune-related phenotypes. We discuss our findings in the context of relevant genetic and epidemiological literature, as well as the limitations and caveats of the study.

Copyright 
The copyright holder for this preprint is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license.
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  • Posted March 10, 2018.

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Genetic correlations among psychiatric and immune-related phenotypes based on genome-wide association data.
Daniel S. Tylee, Jiayin Sun, Jonathan L. Hess, Muhammad A. Tahir, Esha Sharma, Rainer Malik, Bradford B. Worrall, Andrew J. Levine, Jeremy J. Martinson, Sergey Nejenstev, Doug Speed, Annegret Fischer, Eric Mick, Brian R. Walker, Andrew Crawford, Struan F. A. Grant, Constantin Polychronakos, Jonathan P. Bradfield, Patrick M. A. Sleiman, Hakon Hakonarson, Eva Ellinghaus, James T Elder, Lam C Tsoi, Richard C. Trembath, Jonathan N Barker, Andre Franke, Abbas Dehghan, The 23andMe Research Team, The Inflammation Working Group of the CHARGE Consortium, The METASTROKE Consortium of the International Stroke Genetics Consortium, The Netherlands Twin Registry, The neuroCHARGE Working Group, The Eating Disorders Working Groups of the Psychiatric Genomics Consortium, The Obsessive Compulsive Disorder and Tourette Syndrome Working Group, Stephen V Faraone, Stephen J Glatt
bioRxiv 070730; doi: https://doi.org/10.1101/070730
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Genetic correlations among psychiatric and immune-related phenotypes based on genome-wide association data.
Daniel S. Tylee, Jiayin Sun, Jonathan L. Hess, Muhammad A. Tahir, Esha Sharma, Rainer Malik, Bradford B. Worrall, Andrew J. Levine, Jeremy J. Martinson, Sergey Nejenstev, Doug Speed, Annegret Fischer, Eric Mick, Brian R. Walker, Andrew Crawford, Struan F. A. Grant, Constantin Polychronakos, Jonathan P. Bradfield, Patrick M. A. Sleiman, Hakon Hakonarson, Eva Ellinghaus, James T Elder, Lam C Tsoi, Richard C. Trembath, Jonathan N Barker, Andre Franke, Abbas Dehghan, The 23andMe Research Team, The Inflammation Working Group of the CHARGE Consortium, The METASTROKE Consortium of the International Stroke Genetics Consortium, The Netherlands Twin Registry, The neuroCHARGE Working Group, The Eating Disorders Working Groups of the Psychiatric Genomics Consortium, The Obsessive Compulsive Disorder and Tourette Syndrome Working Group, Stephen V Faraone, Stephen J Glatt
bioRxiv 070730; doi: https://doi.org/10.1101/070730

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