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Pathway and network analysis of more than 2,500 whole cancer genomes
View ORCID ProfileMatthew A. Reyna, David Haan, Marta Paczkowska, View ORCID ProfileLieven P.C. Verbeke, View ORCID ProfileMiguel Vazquez, View ORCID ProfileAbdullah Kahraman, View ORCID ProfileSergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, View ORCID ProfilePriyanka Dhingra, View ORCID ProfileRaunak Shrestha, View ORCID ProfileGad Getz, Michael S. Lawrence, View ORCID ProfileJakob Skou Pedersen, View ORCID ProfileMark A. Rubin, View ORCID ProfileDavid A. Wheeler, View ORCID ProfileSøren Brunak, View ORCID ProfileJose MG Izarzugaza, View ORCID ProfileEkta Khurana, View ORCID ProfileKathleen Marchal, View ORCID ProfileChristian von Mering, View ORCID ProfileS. Cenk Sahinalp, View ORCID ProfileAlfonso Valencia, Jüri Reimand, View ORCID ProfileJoshua M. Stuart, View ORCID ProfileBenjamin J. Raphael, on behalf of the PCAWG Drivers and Functional Interpretation Group and the ICGC/TCGA Pan-Cancer Analysis of Whole Genome Network
doi: https://doi.org/10.1101/385294
Matthew A. Reyna
1Department of Computer Science, Princeton University, Princeton, NJ 08540, USA
David Haan
2Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz CA 95060, USA
Marta Paczkowska
3Computational Biology Program, Ontario Institute for Cancer Research, Toronto, Ontario, Canada
Lieven P.C. Verbeke
4Department of Information Technology, IDLab, Ghent University, IMEC
5Department of Plant Biotechnology and Bioinformatics, Ghent University
Miguel Vazquez
6Barcelona Supercomputing Center (BSC), Barcelona, 08034, Spain
7Norwegian University of Science and Technology, Trondheim, Norway
Abdullah Kahraman
8Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, CH-8057 Zürich, Switzerland
9Department of Pathology and Molecular Pathology, University Hospital Zurich, CH-8091 Zürich, Switzerland
Sergio Pulido-Tamayo
4Department of Information Technology, IDLab, Ghent University, IMEC
5Department of Plant Biotechnology and Bioinformatics, Ghent University
Jonathan Barenboim
3Computational Biology Program, Ontario Institute for Cancer Research, Toronto, Ontario, Canada
Lina Wadi
3Computational Biology Program, Ontario Institute for Cancer Research, Toronto, Ontario, Canada
Priyanka Dhingra
10Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065, USA
Raunak Shrestha
11Vancouver Prostate Centre, 2660 Oak Street, Vancouver, BC V6H 3Z6, Canada
Gad Getz
12The Broad Institute of MIT and Harvard, Cambridge, MA 02124, USA
13Massachusetts General Hospital, Center for Cancer Research, Charlestown, MA 02129, USA
14Harvard Medical School, 250 Longwood Avenue, Boston, MA 02115, USA
15Massachusetts General Hospital, Department of Pathology, Boston, MA 02114, USA
Michael S. Lawrence
12The Broad Institute of MIT and Harvard, Cambridge, MA 02124, USA
13Massachusetts General Hospital, Center for Cancer Research, Charlestown, MA 02129, USA
Jakob Skou Pedersen
16Department of Molecular Medicine (MOMA), Aarhus University Hospital, Aarhus, Denmark
17Bioinformatics Research Centre (BiRC), Aarhus University, Aarhus, Denmark
Mark A. Rubin
10Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065, USA
David A. Wheeler
18Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA
Søren Brunak
19DTU Bioinformatics, Department of Bio and Health Informatics, Technical University of Denmark, Kemitorvet, 2800 Kongens Lyngby, Denmark
20Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark
Jose MG Izarzugaza
19DTU Bioinformatics, Department of Bio and Health Informatics, Technical University of Denmark, Kemitorvet, 2800 Kongens Lyngby, Denmark
20Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark
Ekta Khurana
10Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065, USA
Kathleen Marchal
4Department of Information Technology, IDLab, Ghent University, IMEC
5Department of Plant Biotechnology and Bioinformatics, Ghent University
Christian von Mering
8Institute of Molecular Life Sciences and Swiss Institute of Bioinformatics, University of Zurich, CH-8057 Zürich, Switzerland
S. Cenk Sahinalp
11Vancouver Prostate Centre, 2660 Oak Street, Vancouver, BC V6H 3Z6, Canada
21Department of Computer Science, Indiana University, Bloomington, IN 47405, USA
Alfonso Valencia
6Barcelona Supercomputing Center (BSC), Barcelona, 08034, Spain
22ICREA, Barcelona, 08010, Spain
Jüri Reimand
3Computational Biology Program, Ontario Institute for Cancer Research, Toronto, Ontario, Canada
23Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada
Joshua M. Stuart
2Department of Biomolecular Engineering, University of California, Santa Cruz, Santa Cruz CA 95060, USA
Benjamin J. Raphael
1Department of Computer Science, Princeton University, Princeton, NJ 08540, USA
Article usage
Posted August 07, 2018.
Pathway and network analysis of more than 2,500 whole cancer genomes
Matthew A. Reyna, David Haan, Marta Paczkowska, Lieven P.C. Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S. Lawrence, Jakob Skou Pedersen, Mark A. Rubin, David A. Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S. Cenk Sahinalp, Alfonso Valencia, Jüri Reimand, Joshua M. Stuart, Benjamin J. Raphael, on behalf of the PCAWG Drivers and Functional Interpretation Group and the ICGC/TCGA Pan-Cancer Analysis of Whole Genome Network
bioRxiv 385294; doi: https://doi.org/10.1101/385294
Pathway and network analysis of more than 2,500 whole cancer genomes
Matthew A. Reyna, David Haan, Marta Paczkowska, Lieven P.C. Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, Raunak Shrestha, Gad Getz, Michael S. Lawrence, Jakob Skou Pedersen, Mark A. Rubin, David A. Wheeler, Søren Brunak, Jose MG Izarzugaza, Ekta Khurana, Kathleen Marchal, Christian von Mering, S. Cenk Sahinalp, Alfonso Valencia, Jüri Reimand, Joshua M. Stuart, Benjamin J. Raphael, on behalf of the PCAWG Drivers and Functional Interpretation Group and the ICGC/TCGA Pan-Cancer Analysis of Whole Genome Network
bioRxiv 385294; doi: https://doi.org/10.1101/385294
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