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Benchmarking of alignment-free sequence comparison methods
View ORCID ProfileAndrzej Zielezinski, View ORCID ProfileHani Z. Girgis, View ORCID ProfileGuillaume Bernard, View ORCID ProfileChris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna K. Lau, Sophie Röhling, JaeJin Choi, Michael S. Waterman, View ORCID ProfileMatteo Comin, Sung-Hou Kim, View ORCID ProfileSusana Vinga, View ORCID ProfileJonas S. Almeida, View ORCID ProfileCheong Xin Chan, View ORCID ProfileBenjamin T. James, View ORCID ProfileFengzhu Sun, View ORCID ProfileBurkhard Morgenstern, View ORCID ProfileWojciech M. Karlowski
doi: https://doi.org/10.1101/611137
Andrzej Zielezinski
1Department of Computational Biology, Faculty of Biology, Adam Mickiewicz University in Poznan, Umultowska 89, 61-614 Poznan, Poland
Hani Z. Girgis
2Tandy School of Computer Science, The University of Tulsa, 800 South Tucker Drive, Tulsa, OK 74104, USA
Guillaume Bernard
3Sorbonne Université, UMR 7205 ISYEB, Paris 75005 France
Chris-Andre Leimeister
4University of Göttingen, Institute of Microbiology and Genetics, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany
Kujin Tang
5Quantitative and Computational Biology Program, Department of Biological Sciences, University of Southern California, CA 90089, USA
Thomas Dencker
4University of Göttingen, Institute of Microbiology and Genetics, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany
Anna K. Lau
4University of Göttingen, Institute of Microbiology and Genetics, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany
Sophie Röhling
4University of Göttingen, Institute of Microbiology and Genetics, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany
JaeJin Choi
6Department of Chemistry, University of California, Berkeley, CA 94720
7Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
8Department of Integrated Omics for Biomedical Sciences, Yonsei University, Seoul 03722, Republic of Korea
9Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea
Michael S. Waterman
5Quantitative and Computational Biology Program, Department of Biological Sciences, University of Southern California, CA 90089, USA
10Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanghai, 200433, China
Matteo Comin
11Department of Information Engineering, University of Padova, Padova, Italy
Sung-Hou Kim
6Department of Chemistry, University of California, Berkeley, CA 94720
7Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720
8Department of Integrated Omics for Biomedical Sciences, Yonsei University, Seoul 03722, Republic of Korea
9Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea
Susana Vinga
12INESC-ID, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisbon, Portugal
13IDMEC, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisbon, Portugal
Jonas S. Almeida
14National Cancer Institute (NIH/NCI), Division of Epidemiology and Genetics (DCEG)
Cheong Xin Chan
15Institute for Molecular Bioscience, and School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia
Benjamin T. James
2Tandy School of Computer Science, The University of Tulsa, 800 South Tucker Drive, Tulsa, OK 74104, USA
Fengzhu Sun
5Quantitative and Computational Biology Program, Department of Biological Sciences, University of Southern California, CA 90089, USA
10Centre for Computational Systems Biology, School of Mathematical Sciences, Fudan University, Shanghai, 200433, China
Burkhard Morgenstern
4University of Göttingen, Institute of Microbiology and Genetics, Department of Bioinformatics, Goldschmidtstr. 1, 37077 Göttingen, Germany
Wojciech M. Karlowski
1Department of Computational Biology, Faculty of Biology, Adam Mickiewicz University in Poznan, Umultowska 89, 61-614 Poznan, Poland
Posted May 15, 2019.
Benchmarking of alignment-free sequence comparison methods
Andrzej Zielezinski, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna K. Lau, Sophie Röhling, JaeJin Choi, Michael S. Waterman, Matteo Comin, Sung-Hou Kim, Susana Vinga, Jonas S. Almeida, Cheong Xin Chan, Benjamin T. James, Fengzhu Sun, Burkhard Morgenstern, Wojciech M. Karlowski
bioRxiv 611137; doi: https://doi.org/10.1101/611137
Benchmarking of alignment-free sequence comparison methods
Andrzej Zielezinski, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna K. Lau, Sophie Röhling, JaeJin Choi, Michael S. Waterman, Matteo Comin, Sung-Hou Kim, Susana Vinga, Jonas S. Almeida, Cheong Xin Chan, Benjamin T. James, Fengzhu Sun, Burkhard Morgenstern, Wojciech M. Karlowski
bioRxiv 611137; doi: https://doi.org/10.1101/611137
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