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Segmentation-free inference of cell types from in situ transcriptomics data
View ORCID ProfileJeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, View ORCID ProfileBrian Long, View ORCID ProfileLars E. Borm, Emma Garren, View ORCID ProfileThuc Nghi Nguyen, View ORCID ProfileSimone Codeluppi, View ORCID ProfileMatthias Schlesner, View ORCID ProfileBosiljka Tasic, View ORCID ProfileRoland Eils, View ORCID ProfileNaveed Ishaque
doi: https://doi.org/10.1101/800748
Jeongbin Park
1Digital Health Center, Berlin Institute of Health (BIH) and Charité Universitätsmedizin, Berlin, Germany
2Faculty of Biosciences, Heidelberg University, Heidelberg, Germany
Wonyl Choi
3Department of Computer Science, Boston University, Boston, the United States of America
Sebastian Tiesmeyer
1Digital Health Center, Berlin Institute of Health (BIH) and Charité Universitätsmedizin, Berlin, Germany
Brian Long
6Allen Institute for Brain Science, Seattle, WA, USA
Lars E. Borm
4Division of molecular neurobiology, Department of medical biochemistry and biophysics, Karolinska Institutet, Stockholm, Sweden
Emma Garren
6Allen Institute for Brain Science, Seattle, WA, USA
Thuc Nghi Nguyen
6Allen Institute for Brain Science, Seattle, WA, USA
Simone Codeluppi
4Division of molecular neurobiology, Department of medical biochemistry and biophysics, Karolinska Institutet, Stockholm, Sweden
5Science for life laboratory, Stockholm, Sweden
Matthias Schlesner
7Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Bosiljka Tasic
6Allen Institute for Brain Science, Seattle, WA, USA
Roland Eils
1Digital Health Center, Berlin Institute of Health (BIH) and Charité Universitätsmedizin, Berlin, Germany
8Health Data Science Unit, Heidelberg University Hospital, Heidelberg, Germany
Naveed Ishaque
1Digital Health Center, Berlin Institute of Health (BIH) and Charité Universitätsmedizin, Berlin, Germany
Posted October 13, 2019.
Segmentation-free inference of cell types from in situ transcriptomics data
Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Simone Codeluppi, Matthias Schlesner, Bosiljka Tasic, Roland Eils, Naveed Ishaque
bioRxiv 800748; doi: https://doi.org/10.1101/800748
Segmentation-free inference of cell types from in situ transcriptomics data
Jeongbin Park, Wonyl Choi, Sebastian Tiesmeyer, Brian Long, Lars E. Borm, Emma Garren, Thuc Nghi Nguyen, Simone Codeluppi, Matthias Schlesner, Bosiljka Tasic, Roland Eils, Naveed Ishaque
bioRxiv 800748; doi: https://doi.org/10.1101/800748
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