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A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
View ORCID ProfileSimon Dellicour, Keith Durkin, Samuel L. Hong, Bert Vanmechelen, Joan Martí-Carreras, Mandev S. Gill, Cécile Meex, Sébastien Bontems, Emmanuel André, Marius Gilbert, Conor Walker, Nicola De Maio, View ORCID ProfileNuno R. Faria, James Hadfield, Marie-Pierre Hayette, Vincent Bours, Tony Wawina-Bokalanga, Maria Artesi, Guy Baele, Piet Maes
doi: https://doi.org/10.1101/2020.05.05.078758
Simon Dellicour
1Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, CP160/12 50, av. FD Roosevelt, 1050 Bruxelles, Belgium
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Keith Durkin
3Department of Human Genetics, CHU Liège, and Medical Genomics, GIGA Research Center, University of Liège, Belgium
Samuel L. Hong
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Bert Vanmechelen
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Joan Martí-Carreras
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Mandev S. Gill
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Cécile Meex
4Department of Clinical Microbiology, University of Liège, 4000, Liège, Belgium
Sébastien Bontems
4Department of Clinical Microbiology, University of Liège, 4000, Liège, Belgium
Emmanuel André
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Marius Gilbert
1Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, CP160/12 50, av. FD Roosevelt, 1050 Bruxelles, Belgium
Conor Walker
5European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK
Nicola De Maio
5European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK
Nuno R. Faria
6Department of Zoology, University of Oxford, UK
7Department of Infectious Disease Epidemiology, Imperial College London, UK
James Hadfield
8Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
Marie-Pierre Hayette
4Department of Clinical Microbiology, University of Liège, 4000, Liège, Belgium
Vincent Bours
3Department of Human Genetics, CHU Liège, and Medical Genomics, GIGA Research Center, University of Liège, Belgium
Tony Wawina-Bokalanga
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Maria Artesi
3Department of Human Genetics, CHU Liège, and Medical Genomics, GIGA Research Center, University of Liège, Belgium
Guy Baele
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Piet Maes
2Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000 Leuven, Belgium
Posted October 21, 2020.
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
Simon Dellicour, Keith Durkin, Samuel L. Hong, Bert Vanmechelen, Joan Martí-Carreras, Mandev S. Gill, Cécile Meex, Sébastien Bontems, Emmanuel André, Marius Gilbert, Conor Walker, Nicola De Maio, Nuno R. Faria, James Hadfield, Marie-Pierre Hayette, Vincent Bours, Tony Wawina-Bokalanga, Maria Artesi, Guy Baele, Piet Maes
bioRxiv 2020.05.05.078758; doi: https://doi.org/10.1101/2020.05.05.078758
A phylodynamic workflow to rapidly gain insights into the dispersal history and dynamics of SARS-CoV-2 lineages
Simon Dellicour, Keith Durkin, Samuel L. Hong, Bert Vanmechelen, Joan Martí-Carreras, Mandev S. Gill, Cécile Meex, Sébastien Bontems, Emmanuel André, Marius Gilbert, Conor Walker, Nicola De Maio, Nuno R. Faria, James Hadfield, Marie-Pierre Hayette, Vincent Bours, Tony Wawina-Bokalanga, Maria Artesi, Guy Baele, Piet Maes
bioRxiv 2020.05.05.078758; doi: https://doi.org/10.1101/2020.05.05.078758
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