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Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets
Min-Hak Choi, View ORCID ProfileJang-il Sohn, Dohun Yi, View ORCID ProfileA Vipin Menon, Yeon Jeong Kim, Sungkyu Kyung, Seung-Ho Shin, Byunggook Na, View ORCID ProfileJe-Gun Joung, Sungro Yoon, View ORCID ProfileYoungil Koh, Daehyun Baek, Tae-Min Kim, View ORCID ProfileJin-Wu Nam
doi: https://doi.org/10.1101/2020.10.25.354456
Min-Hak Choi
1Department of Life Science, Hanyang University, Seoul 04763, Republic of Korea
Jang-il Sohn
1Department of Life Science, Hanyang University, Seoul 04763, Republic of Korea
2Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 04763, Republic of Korea
Dohun Yi
1Department of Life Science, Hanyang University, Seoul 04763, Republic of Korea
A Vipin Menon
1Department of Life Science, Hanyang University, Seoul 04763, Republic of Korea
Yeon Jeong Kim
4Samsung Genome Institute, Samsung Medical Center, 81 Irwon-ro, Gangnam-gu, Seoul, 06351, Republic of Korea
Sungkyu Kyung
5GENINUS Inc, Seoul 05836, Republic of Korea
Seung-Ho Shin
5GENINUS Inc, Seoul 05836, Republic of Korea
Byunggook Na
6Department of Electrical and Computer Engineering, Seoul National University, 08826, Republic of Korea
Je-Gun Joung
4Samsung Genome Institute, Samsung Medical Center, 81 Irwon-ro, Gangnam-gu, Seoul, 06351, Republic of Korea
Sungro Yoon
6Department of Electrical and Computer Engineering, Seoul National University, 08826, Republic of Korea
Youngil Koh
7College of Medicine, Seoul National University, Seoul 03080, Republic of Korea
Daehyun Baek
8School of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea
Tae-Min Kim
9Department of Medical Informatics and Cancer Research Institute, College of Medicine, The Catholic University of Korea, Seoul 06591, Republic of Korea
Jin-Wu Nam
1Department of Life Science, Hanyang University, Seoul 04763, Republic of Korea
2Research Institute for Convergence of Basic Sciences, Hanyang University, Seoul 04763, Republic of Korea
3Research Institute for Natural Sciences, Hanyang University, Seoul 04763, Republic of Korea
Posted October 26, 2020.
Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets
Min-Hak Choi, Jang-il Sohn, Dohun Yi, A Vipin Menon, Yeon Jeong Kim, Sungkyu Kyung, Seung-Ho Shin, Byunggook Na, Je-Gun Joung, Sungro Yoon, Youngil Koh, Daehyun Baek, Tae-Min Kim, Jin-Wu Nam
bioRxiv 2020.10.25.354456; doi: https://doi.org/10.1101/2020.10.25.354456
Ultra-fast Prediction of Somatic Structural Variations by Reduced Read Mapping via Pan-Genome k-mer Sets
Min-Hak Choi, Jang-il Sohn, Dohun Yi, A Vipin Menon, Yeon Jeong Kim, Sungkyu Kyung, Seung-Ho Shin, Byunggook Na, Je-Gun Joung, Sungro Yoon, Youngil Koh, Daehyun Baek, Tae-Min Kim, Jin-Wu Nam
bioRxiv 2020.10.25.354456; doi: https://doi.org/10.1101/2020.10.25.354456
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