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iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement
Yuchen Yang, Gang Li, Yifang Xie, Li Wang, Yingxi Yang, Jiandong Liu, Li Qian, View ORCID ProfileYun Li
doi: https://doi.org/10.1101/2020.11.09.375659
Yuchen Yang
1Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC 27599, USA
2McAllister Heart Institute, University of North Carolina, Chapel Hill, NC 27599, USA
Gang Li
3Department of Statistics and Operations Research, University of North Carolina, Chapel Hill, NC 27599, USA
Yifang Xie
1Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC 27599, USA
2McAllister Heart Institute, University of North Carolina, Chapel Hill, NC 27599, USA
Li Wang
4Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, Hubei 430071, China
Yingxi Yang
5Department of Statistics, Sun Yat-sen University, Guangzhou, Guangdong 510275, China
Jiandong Liu
1Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC 27599, USA
2McAllister Heart Institute, University of North Carolina, Chapel Hill, NC 27599, USA
Li Qian
1Department of Pathology and Laboratory Medicine, University of North Carolina, Chapel Hill, NC 27599, USA
2McAllister Heart Institute, University of North Carolina, Chapel Hill, NC 27599, USA
Yun Li
6Department of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA
7Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA
8Department of Computer Science, University of North Carolina, Chapel Hill, NC 27599, USA
Posted January 12, 2021.
iSMNN: Batch Effect Correction for Single-cell RNA-seq data via Iterative Supervised Mutual Nearest Neighbor Refinement
Yuchen Yang, Gang Li, Yifang Xie, Li Wang, Yingxi Yang, Jiandong Liu, Li Qian, Yun Li
bioRxiv 2020.11.09.375659; doi: https://doi.org/10.1101/2020.11.09.375659
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