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December 12, 2014

  • Model checking to assess T-helper cell plasticity
    Wassim Abou-Jaoudé, Pedro T. Monteiro, Aurélien Naldi, Maximilien Grandclaudon, Vassili Soumelis, Claudine Chaouiya, Denis Thieffry
    bioRxiv 012641; doi: https://doi.org/10.1101/012641
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  • Polyester: Simulating RNA-Seq Datasets With Differential Transcript Expression
    Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek
    bioRxiv 006015; doi: https://doi.org/10.1101/006015
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  • An annotated consensus genetic map for Pinus taeda L. and extent of linkage disequilibrium in three genotype-phenotype discovery populations
    Jared W. Westbrook, Vikram E. Chhatre, Le-Shin Wu, Srikar Chamala, Leandro Gomide Neves, Patricio Muñoz, Pedro J. Martínez-García, David B. Neale, Matias Kirst, Keithanne Mockaitis, C. Dana Nelson, Gary F. Peter, John M. Davis, Craig S. Echt
    bioRxiv 012625; doi: https://doi.org/10.1101/012625
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  • The Avian RNAseq Consortium: a community effort to annotate the chicken genome
    Jacqueline Smith, David W. Burt, the Avian RNAseq Consortium
    bioRxiv 012559; doi: https://doi.org/10.1101/012559
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  • Mouse conventional dendritic cells can be universally classified based on the mutually exclusive expression of XCR1 and SIRPα
    Stephanie Gurka, Martina Becker, Evelyn Hartung, Richard A. Kroczek
    bioRxiv 012567; doi: https://doi.org/10.1101/012567
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  • Genome-wide Ultrabithorax binding analysis reveals highly targeted genomic loci at developmental regulators and a potential connection to Polycomb-mediated regulation
    Daria Shlyueva, Antonio C.A. Meireles-Filho, Michaela Pagani, Alexander Stark
    bioRxiv 012609; doi: https://doi.org/10.1101/012609
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December 11, 2014

  • Heterogeneous Network Edge Prediction: A Data Integration Approach to Prioritize Disease-Associated Genes
    Daniel S. Himmelstein, Sergio E. Baranzini
    bioRxiv 011569; doi: https://doi.org/10.1101/011569
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  • Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices
    Young Hwan Chang, Roel Dobbe, Palak Bhushan, Joe W. Gray, Claire J. Tomlin
    bioRxiv 012534; doi: https://doi.org/10.1101/012534
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  • Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing
    Sean P. Gordon, Elizabeth Tseng, Asaf Salamov, Jiwei Zhang, Xiandong Meng, Zhiying Zhao, Dongwan Kang, Jason Underwood, Igor V. Grigoriev, Melania Figueroa, Jonathan S. Schilling, Feng Chen, Zhong Wang
    bioRxiv 012542; doi: https://doi.org/10.1101/012542
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  • DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent
    Graham Jones, Bengt Oxelman
    bioRxiv 003178; doi: https://doi.org/10.1101/003178
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