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September 17, 2014

Reducing INDEL calling errors in whole-genome and exome sequencing data
Han Fang, Yiyang Wu, Giuseppe Narzisi, Jason A. O’Rawe, Laura T. Jimenez Barrón, Julie Rosenbaum, Michael Ronemus, Ivan Iossifov, Michael C. Schatz, Gholson J. Lyon

bioRxiv 006148; doi: https://doi.org/10.1101/006148

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Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes
John Beaulaurier, Shijia Zhu, Robert Sebra, Xue-Song Zhang, Chaggai Rosenbluh, Gintaras Deikus, Nan Shen, Diana Munera, Matthew K. Waldor, Martin Blaser, Andrew Chess, Eric E. Schadt, Gang Fang

bioRxiv 007823; doi: https://doi.org/10.1101/007823

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Inference of Gorilla demographic and selective history from whole genome sequence data
Kimberly F. McManus, Joanna L. Kelley, Shiya Song, Krishna Veeramah, August E. Woerner, Laurie S. Stevison, Oliver A. Ryder, Jeffrey M. Kidd, Jeffrey D. Wall, Carlos D. Bustamante, Michael F. Hammer

bioRxiv 009191; doi: https://doi.org/10.1101/009191

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September 16, 2014

An introduction to LifeLines DEEP: study design and baseline characteristics
Ettje F. Tigchelaar, Alexandra Zhernakova, Jackie A.M. Dekens, Gerben Hermes, Agnieszka Baranska, Zlatan Mujagic, Morris A. Swertz, Angélica M. Muñoz, Patrick Deelen, Maria C. Cénit, Lude Franke, Salome Scholtens, Ronald P. Stolk, Cisca Wijmenga, Edith J.M. Feskens

bioRxiv 009217; doi: https://doi.org/10.1101/009217

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Century-scale methylome stability in a recently diverged Arabidopsis thaliana lineage
Jörg Hagmann, Claude Becker, Jonas Müller, Oliver Stegle, Rhonda C. Meyer, Korbinian Schneeberger, Joffrey Fitz, Thomas Altmann, Joy Bergelson, Karsten Borgwardt, Detlef Weigel

bioRxiv 009225; doi: https://doi.org/10.1101/009225

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Oncogenic mutations of the EGF-Receptor ectodomain reveal an unexpected mechanism for ligand-independent activation
Laura Orellana, Adam Hospital, Modesto Orozco

bioRxiv 009068; doi: https://doi.org/10.1101/009068

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Functional Antagonism Between CELF and Mbnl Proteins in the Cytoplasm
Eric T. Wang, Amanda J. Ward, Jennifer Cherone, Thomas T. Wang, Jimena Giudice, Thomas A. Cooper, Christopher B. Burge

bioRxiv 009183; doi: https://doi.org/10.1101/009183

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T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data
Anna-Sophie Fiston-Lavier, Maite G. Barrón, Dmitri A. Petrov, Josefa González

bioRxiv 002964; doi: https://doi.org/10.1101/002964

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September 15, 2014

Sequence co-evolution gives 3D contacts and structures of protein complexes
Thomas A. Hopf, Charlotta P. I. Schärfe, João P. G. L. M. Rodrigues, Anna G. Green, Chris Sander, Alexandre M. J. J. Bonvin, Debora S. Marks

bioRxiv 004762; doi: https://doi.org/10.1101/004762

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Interpretable per Case Weighted Ensemble Method for Cancer Associations
Adrin Jalali, Nico Pfeifer

bioRxiv 008185; doi: https://doi.org/10.1101/008185

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