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December 30, 2015

Sequential Multiple Assignment Randomized Trials: An Opportunity for Improved Design of Stroke Reperfusion Trials
William Meurer, Nicholas J. Seewald, Kelley Kidwell

bioRxiv 035683; doi: https://doi.org/10.1101/035683

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Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasma
Philip Burnham, Min Seong Kim, Sean Agbor-Enoh, Helen Luikart, Hannah A. Valantine, Kiran K. Khush, Iwijn De Vlaminck

bioRxiv 035741; doi: https://doi.org/10.1101/035741

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Simulating multi-substrate diffusive transport in 3-D tissues with BioFVM
Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Paul Macklin

bioRxiv 035709; doi: https://doi.org/10.1101/035709

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Agent-based simulation of large tumors in 3-D microenvironments
Ahmadreza Ghaffarizadeh, Samuel H. Friedman, Paul Macklin

bioRxiv 035733; doi: https://doi.org/10.1101/035733

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A simple method for automated equilibration detection in molecular simulations
John D. Chodera

bioRxiv 021659; doi: https://doi.org/10.1101/021659

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Incoherent feedforward motifs as immune change detectors
Eduardo D. Sontag

bioRxiv 035600; doi: https://doi.org/10.1101/035600

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Constricted cell migration causes nuclear lamina damage, DNA breaks, and squeeze-out of repair factors
Jerome Irianto, Charlotte R. Pfeifer, Yuntao Xia, Avathamsa Athirasala, Irena L. Ivanovska, Roger A. Greenberg, Dennis E. Discher

bioRxiv 035626; doi: https://doi.org/10.1101/035626

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December 29, 2015

Diversity of Pico- to Mesoplankton Along the 2000 km Salinity Gradient of the Baltic Sea
Yue O.O. Hu, Bengt Karlson, Sophie Charvet, Anders F. Andersson

bioRxiv 035485; doi: https://doi.org/10.1101/035485

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Post-embryonic hourglass patterns mark ontogenetic transitions in plant development
Hajk-Georg Drost, Julia Bellstäedt, Diarmuid S. Ó’Maoiléidigh, Anderson T. Silva, Alexander Gabel, Claus Weinholdt, Patrick T. Ryan, Bas J.W. Dekkers, Leónie Bentsink, Henk Hilhorst, Wilco Ligterink, Frank Wellmer, Ivo Grosse, Marcel Quint

bioRxiv 035527; doi: https://doi.org/10.1101/035527

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December 28, 2015

Chicken rRNA gene cluster structure
Alexander Demin, Elena Koshel, Alsu Saifitdinova, Svetlana Galkina, Tatsuo Fukagawa, Elena Gaginskaya

bioRxiv 035477; doi: https://doi.org/10.1101/035477

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December 30, 2015

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