All Articles

March 08, 2017

Modeling cumulative biological phenomena with Suppes-Bayes Causal Networks
Daniele Ramazzotti, Alex Graudenzi, Giulio Caravagna, Marco Antoniotti

bioRxiv 041343; doi: https://doi.org/10.1101/041343

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Predicting metabolic adaptation from networks of mutational paths
Christos Josephides, Peter S. Swain

bioRxiv 115170; doi: https://doi.org/10.1101/115170

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Cohesion: A method for quantifying the connectivity of microbial communities
Cristina M. Herren, Katherine D. McMahon

bioRxiv 112391; doi: https://doi.org/10.1101/112391

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Free energy based high-resolution modeling of CTCF-mediated chromatin loops for human genome
Wayne Dawson, Dariusz Plewczynski

bioRxiv 105676; doi: https://doi.org/10.1101/105676

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Plasmid DNA analysis of pristine groundwater microbial communities reveal extensive presence of metal resistance genes
Ankita Kothari, Yu-Wei Wu, Marimikel Charrier, Lara Rajeev, Andrea M. Rocha, Charles J. Paradis, Terry C. Hazen, Steven W. Singer, Aindrila Mukhopadhyay

bioRxiv 113860; doi: https://doi.org/10.1101/113860

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How ecosystems recover from pulse perturbations: A theory of short- to long-term responses
J.-F. Arnoldi, A. Bideault, M. Loreau, B. Haegeman

bioRxiv 115048; doi: https://doi.org/10.1101/115048

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Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic radiation of trophic specialist pupfishes
Emilie J. Richards, Christopher H. Martin

bioRxiv 115055; doi: https://doi.org/10.1101/115055

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Transcriptomic profiling of high-density Giardia foci encysting in the murine proximal intestine
JK Pham, C Nosala, EY Scott, KF Nguyen, KD Hagen, HN Starcevich, SC Dawson

bioRxiv 114983; doi: https://doi.org/10.1101/114983

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Tagger: BeCalm API for rapid named entity recognition
Lars Juhl Jensen

bioRxiv 115022; doi: https://doi.org/10.1101/115022

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A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase
Thiago Britto-Borges, Geoffrey J. Barton

bioRxiv 115121; doi: https://doi.org/10.1101/115121

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