Job quiet-cherry-1881

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2015-Dec-16 09:39:47 PST

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Evanno method

*Evanno et al., 2005. Molecular Ecology 14, 2611 - 2620. How are we calculating this? Look at the FAQ.

Plot of Ln'(K)

L'(K): pdf   eps


Plot of |Ln''(K)|

|L''(K)|: pdf   eps


Plot of delta K

Delta K: pdf   eps


The Evanno table output is also available as a tab-delimited text file (for use with Excel) here.

K Reps Mean LnP(K) Stdev LnP(K) Ln'(K) |Ln''(K)| Delta K
1 5 -5206.020000 0.465833
2 5 -5165.180000 1.713768 40.840000 55.960000 32.653199
3 5 -5180.300000 13.358705 -15.120000 207.063333 15.500255
4 6 -5402.483333 17.935375 -222.183333 80.566667 4.492054
5 5 -5544.100000 70.619367 -141.616667 179.356667 2.539766
6 5 -5506.360000 99.383565 37.740000 100.513333 1.011368
7 6 -5569.133333 34.868706 -62.773333 58.926667 1.689959
8 5 -5572.980000 38.691950 -3.846667 62.373333 1.612049
9 5 -5639.200000 46.627942 -66.220000 106.195000 2.277497
10 4 -5599.225000 57.500167 39.975000


Raw STRUCTURE output

The raw STRUCTURE output is also available as a tab-delimited text file (for use with Excel) here.

File name Run # K Est. Ln prob. of data Mean value of Ln likelihood Variance of Ln likelihood
LagoSalso_1_10FabriceCAF_1k_run_3_f 3 1 -5205.8 -5191.8 28.1
LagoSalso_1_10FabriceCAF_1k_run_4_f 4 1 -5206.1 -5191.8 28.6
LagoSalso_1_10FabriceCAF_1k_run_1_f 1 1 -5205.7 -5191.7 28.1
LagoSalso_1_10FabriceCAF_1k_run_2_f 2 1 -5206.8 -5191.7 30.3
LagoSalso_1_10FabriceCAF_1k_run_5_f 5 1 -5205.7 -5191.7 28.1
LagoSalso_1_10FabriceCAF_2k_run_7_f 7 2 -5162.9 -5092.3 141.4
LagoSalso_1_10FabriceCAF_2k_run_10_f 10 2 -5167.4 -5092.1 150.7
LagoSalso_1_10FabriceCAF_2k_run_8_f 8 2 -5165.2 -5092.3 145.8
LagoSalso_1_10FabriceCAF_2k_run_9_f 9 2 -5166.1 -5092.6 147.1
LagoSalso_1_10FabriceCAF_2k_run_6_f 6 2 -5164.3 -5091.9 144.8
LagoSalso_1_10FabriceCAF_3k_run_13_f 13 3 -5201.2 -5036.4 329.6
LagoSalso_1_10FabriceCAF_3k_run_11_f 11 3 -5171.6 -5035.6 272.0
LagoSalso_1_10FabriceCAF_3k_run_15_f 15 3 -5176.7 -5035.2 283.0
LagoSalso_1_10FabriceCAF_3k_run_14_f 14 3 -5167.3 -5035.0 264.7
LagoSalso_1_10FabriceCAF_3k_run_12_f 12 3 -5184.7 -5037.5 294.4
LagoSalso_1_10FabriceLagoSalso_4k_run_1_f 1 4 -5424.6 -5013.9 821.5
LagoSalso_1_10FabriceCAF_4k_run_16_f 16 4 -5396.3 -5021.2 750.2
LagoSalso_1_10FabriceLagoSalso_4k_run_2_f 2 4 -5397.0 -5017.7 758.7
LagoSalso_1_10FabriceLagoSalso_4k_run_5_f 5 4 -5379.6 -5019.6 720.1
LagoSalso_1_10FabriceLagoSalso_4k_run_3_f 3 4 -5393.7 -5035.2 717.0
LagoSalso_1_10FabriceLagoSalso_4k_run_4_f 4 4 -5423.7 -5014.2 819.0
LagoSalso_1_10FabriceLagoSalso_5k_run_6_f 6 5 -5530.8 -4980.8 1100.0
LagoSalso_1_10FabriceLagoSalso_5k_run_8_f 8 5 -5621.1 -4984.9 1272.5
LagoSalso_1_10FabriceLagoSalso_5k_run_7_f 7 5 -5481.3 -4970.4 1021.8
LagoSalso_1_10FabriceLagoSalso_5k_run_10_f 10 5 -5614.0 -4986.3 1255.4
LagoSalso_1_10FabriceLagoSalso_5k_run_9_f 9 5 -5473.3 -4969.7 1007.1
LagoSalso_1_10FabriceLagoSalso_6k_run_14_f 14 6 -5505.9 -4967.1 1077.7
LagoSalso_1_10FabriceLagoSalso_6k_run_13_f 13 6 -5460.2 -4952.9 1014.6
LagoSalso_1_10FabriceLagoSalso_6k_run_15_f 15 6 -5445.8 -4952.6 986.3
LagoSalso_1_10FabriceLagoSalso_6k_run_11_f 11 6 -5678.2 -4954.5 1447.3
LagoSalso_1_10FabriceLagoSalso_6k_run_12_f 12 6 -5441.7 -4960.8 961.8
LagoSalso_1_10LagoSalsoFabrice_7k_run_1_f 1 7 -5549.5 -4940.3 1218.5
LagoSalso_1_10LagoSalsoFabrice_7k_run_3_f 3 7 -5550.8 -4930.4 1240.9
LagoSalso_1_10LagoSalsoFabrice_7k_run_2_f 2 7 -5605.6 -4937.1 1336.9
LagoSalso_1_10LagoSalsoFabrice_7k_run_4_f 4 7 -5560.7 -4936.1 1249.2
LagoSalso_1_10FabriceLagoSalso_7k_run_16_f 16 7 -5618.3 -4940.0 1356.6
LagoSalso_1_10LagoSalsoFabrice_7k_run_5_f 5 7 -5529.9 -4936.0 1187.9
LagoSalso_1_10LagoSalsoFabrice_8k_run_6_f 6 8 -5606.2 -4923.0 1366.3
LagoSalso_1_10LagoSalsoFabrice_8k_run_7_f 7 8 -5544.7 -4937.3 1214.9
LagoSalso_1_10LagoSalsoFabrice_8k_run_8_f 8 8 -5577.8 -4911.6 1332.3
LagoSalso_1_10LagoSalsoFabrice_8k_run_9_f 9 8 -5523.3 -4917.8 1211.1
LagoSalso_1_10LagoSalsoFabrice_8k_run_10_f 10 8 -5612.9 -4914.2 1397.4
LagoSalso_1_10LagoSalsoFabrice_9k_run_11_f 11 9 -5660.5 -4902.3 1516.3
LagoSalso_1_10LagoSalsoFabrice_9k_run_12_f 12 9 -5664.7 -4919.3 1490.7
LagoSalso_1_10LagoSalsoFabrice_9k_run_15_f 15 9 -5659.4 -4902.0 1514.9
LagoSalso_1_10LagoSalsoFabrice_9k_run_14_f 14 9 -5655.4 -4917.9 1475.2
LagoSalso_1_10LagoSalsoFabrice_9k_run_13_f 13 9 -5556.0 -4900.6 1311.0
LagoSalso_1_10LagoSalsoFabrice_10k_run_17_f 17 10 -5631.6 -4889.7 1483.8
LagoSalso_1_10LagoSalsoFabrice_10k_run_19_f 19 10 -5526.5 -4901.3 1250.3
LagoSalso_1_10LagoSalsoFabrice_10k_run_18_f 18 10 -5582.2 -4899.9 1364.7
LagoSalso_1_10LagoSalsoFabrice_10k_run_16_f 16 10 -5656.6 -4902.7 1507.8


CITATION

Earl, Dent A. and vonHoldt, Bridgett M. (2012)
STRUCTURE HARVESTER: a website and program for visualizing 
STRUCTURE output and implementing the Evanno method. 
Conservation Genetics Resources vol. 4 (2) pp. 359-361 doi: 10.1007/s12686-011-9548-7
Core version: vA.2 July 2014
Plot version: vA.1 November 2012
Web version: v0.6.94 July 2014

© Dent Earl 2007-2014