RT Journal Article
SR Electronic
T1 Interactive single cell RNA-Seq analysis with the Single Cell Toolkit (SCTK)
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 329755
DO 10.1101/329755
A1 David F. Jenkins
A1 Tyler Faits
A1 Emma Briars
A1 Sebastian Carrasco Pro
A1 Steve Cunningham
A1 Joshua D. Campbell
A1 Masanao Yajima
A1 W. Evan Johnson
YR 2018
UL http://biorxiv.org/content/early/2018/05/24/329755.abstract
AB Single cell RNA-sequencing (scRNA-Seq) allows researchers to profile transcriptional activity in individual cells. However, the complex nature of these data and variability in study design and data generation requires sophisticated computational tools and informed analytical decisions. Here, we present the Single Cell Toolkit (SCTK), an interactive scRNA-Seq analysis package that enables users to perform scRNA-Seq analysis interactively using a command-line workflow or a graphical user interface (GUI) written in R/Shiny.