@article {Wang350538, author = {Wanxin Wang and Felipe Vilella and Inmaculada Moreno and Wenying Pan and Carlos Simon and Stephen R. Quake}, title = {Single cell RNAseq provides a molecular and cellular cartography of changes to the human endometrium through the menstrual cycle}, elocation-id = {350538}, year = {2018}, doi = {10.1101/350538}, publisher = {Cold Spring Harbor Laboratory}, abstract = {In a human menstrual cycle, the endometrium undergoes remodeling, shedding, and regeneration which are driven by substantial gene expression changes in the underlying cellular hierarchy. Despite its importance in human fertility and regenerative biology, mechanistic understanding of this unique type of tissue homeostasis remains rudimentary. Here, we characterized the transcriptomic transformation of human endometrium at single cell resolution, dissecting multidimensional cellular heterogeneity of the tissue across the entire natural menstrual cycle. We analyzed 6 endometrial cell types, including a previously uncharacterized ciliated epithelial cell type, during four major phases of endometrial transformation, and found characteristic signatures for each cell type and phase. We discovered that human window of implantation opens up with an abrupt and discontinuous transcriptomic activation in the epithelium, accompanied with widespread decidualized feature in the stroma. These data reveal signatures in the luminal and glandular epithelium during epithelial gland reconstruction, and suggest a mechanism for adult gland formation.}, URL = {https://www.biorxiv.org/content/early/2018/06/19/350538}, eprint = {https://www.biorxiv.org/content/early/2018/06/19/350538.full.pdf}, journal = {bioRxiv} }