RT Journal Article
SR Electronic
T1 A quantitative framework for investigating the reliability of network construction
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 332536
DO 10.1101/332536
A1 Alyssa R. Cirtwill
A1 Anna Eklöf
A1 Tomas Roslin
A1 Kate Wootton
A1 Dominique Gravel
YR 2018
UL http://biorxiv.org/content/early/2018/07/03/332536.abstract
AB Descriptions of ecological networks typically assume that the same interspecific interactions occur each time a community is observed. This contrasts with the known stochasticity of ecological communities: community composition, species abundances, and link structure all vary in space and time. Moreover, finite sampling generates variation in the set of interactions actually observed. Here we develop the conceptual and analytical tools needed to capture uncertainty in the estimation of pairwise interactions. To define the problem, we identify the different contributions to the uncertainty of an interaction and its implications for the estimation of network properties. We then outline a framework to quantify the uncertainty around each interaction. We illustrate this framework using the most extensively sampled network to date. We found significant uncertainty in estimates for the probability of most pairwise interactions which we could, however, limit with informative priors. Through these efforts, we demonstrate the utility of our approach and the importance of acknowledging the uncertainty inherent in network studies. Most importantly, we stress that networks are best thought of as systems constructed from random variables, the stochastic nature of which must be acknowledged for an accurate representation. Doing so will fundamentally change networks analyses and yield greater realism.