RT Journal Article SR Electronic T1 A plant pathogen utilizes effector proteins for microbiome manipulation JF bioRxiv FD Cold Spring Harbor Laboratory SP 2020.01.30.926725 DO 10.1101/2020.01.30.926725 A1 Nick C. Snelders A1 Hanna Rovenich A1 Gabriella C. Petti A1 Mercedes Rocafort A1 Julia A. Vorholt A1 Jeroen R. Mesters A1 Michael F. Seidl A1 Reindert Nijland A1 Bart P.H.J. Thomma YR 2020 UL http://biorxiv.org/content/early/2020/01/31/2020.01.30.926725.abstract AB During colonization of their hosts, pathogens secrete effector proteins to promote disease development through various mechanisms. Increasing evidence shows that the host microbiome plays a crucial role in health, and that hosts actively shape their microbiomes to suppress disease. We hypothesized that pathogens evolved to manipulate host microbiomes to their advantage in turn. Here, we show that the fungal plant pathogen Verticillium dahliae utilizes effector proteins for niche colonization through selective manipulation of host microbiomes by suppressing microbes with antagonistic activities. Moreover, we show that effector proteins are similarly exploited for microbiome manipulation in the soil environment, where the fungus resides in absence of a host. In conclusion, we demonstrate that pathogens utilize effector proteins to modulate microbiome compositions and propose that their effector catalogs represent an untapped resource for novel antibiotics.