PT - JOURNAL ARTICLE AU - Ruiyao Cai AU - Chenchen Pan AU - Alireza Ghasemigharagoz AU - Mihail I. Todorov AU - Benjamin Förstera AU - Shan Zhao AU - Harsharan S. Bhatia AU - Leander Mrowka AU - Delphine Theodorou AU - Markus Rempfler AU - Anna Xavier AU - Benjamin T. Kress AU - Corinne Benakis AU - Arthur Liesz AU - Bjoern Menze AU - Martin Kerschensteiner AU - Maiken Nedergaard AU - Ali Ertürk TI - Panoptic vDISCO imaging reveals neuronal connectivity, remote trauma effects and meningeal vessels in intact transparent mice AID - 10.1101/374785 DP - 2018 Jan 01 TA - bioRxiv PG - 374785 4099 - http://biorxiv.org/content/early/2018/07/23/374785.short 4100 - http://biorxiv.org/content/early/2018/07/23/374785.full AB - Analysis of entire transparent rodent bodies could provide holistic information on biological systems in health and disease. However, it has been challenging to reliably image and quantify signal from endogenously expressed fluorescent proteins in large cleared mouse bodies due to the low signal contrast. Here, we devised a pressure driven, nanobody based whole-body immunolabeling technology to enhance the signal of fluorescent proteins by up to two orders of magnitude. This allowed us to image subcellular details in transparent mouse bodies through bones and highly autofluorescent tissues, and perform quantifications. We visualized for the first-time whole-body neuronal connectivity of an entire adult mouse and discovered that brain trauma induces degeneration of peripheral axons. We also imaged meningeal lymphatic vessels and immune cells through the intact skull and vertebra in naïve animals and trauma models. Thus, our new approach can provide an unbiased holistic view of biological events affecting the nervous system and the rest of the body.Note: Manuscript videos are available at ‘Supplementary material’ section of BioRxiv and at the following link http://vdisco.isd-muc.de/